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universalmotif
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3
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universalmotif, shuffle_sequences quits unexpectedly when running on HPC
universalmotif
3.4 years ago
alexandre.blais
▴ 50
2
votes
2
replies
1.1k
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universalmotif, question about enrich_motifs function and number of hits returned
universalmotif
scanning
enrich_motifs
PWM
3.5 years ago
alexandre.blais
▴ 50
3
votes
8
replies
1.9k
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iupac2meme function missing in universalmotif package
universalmotif
updated 4.2 years ago by
snystrom
▴ 10 • written 4.4 years ago by
lessismore
▴ 20
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Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
by
Gordon Smyth
52k
> How do these logFC values compare to standard effect sizes derived using a basic regression model like lm()? Exactly the same. Both soft…
Comment: Applying lmFit(), eBayes() and topTable() for modeling associations between NMR-
by
anni
• 0
Ok, thanks! I have just a couple more questions: 1. Based on the [limma User's Guide][1], for binary predictors like overweight, I have i…
Comment: Online workshop "Working with ChatGPT in R" 2023-03-09
by
tnaru607
• 0
Thanks for sharing your workflow and benchmarking approach - very informative! I've been experimenting with AI-assisted tools recently, es…
Comment: minfi latest update for EPIC V2 chip
by
UlyssesHenson
• 0
These provide updated manifests and annotations aligned with the latest genome build (hg38) and probe content for the EPIC V2 array. [itali…
Comment: Design Matrix with paired and independent samples plus RUVg Spike-in normalizati
by
Mei
• 0
I have a similar experiment with 7 paired samples (T0 and T1) in each of 4 outcome groups. I am using RUVr combined with limma-voom, so I …
Votes
I would like to perform differential expression analysis of lncRNAs using DESeq2 and edgeR.
Answer: ExperimentHub full metadata
Answer: AnnotationHub/ExperimentHub resources backup
Answer: ExperimentHub full metadata
A: dba.count Can't count: some peaksets are not associated with a .bam file.
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