HSP90 Inhibitors: Design and Evaluation
HSP90 Inhibitors: Design and Evaluation
https://doi.org/10.1007/s11030-022-10423-7
ORIGINAL ARTICLE
Received: 24 December 2021 / Accepted: 23 March 2022 / Published online: 16 April 2022
© The Author(s), under exclusive licence to Springer Nature Switzerland AG 2022
Abstract
Heat shock protein 90 (HSP90) is a promising anticancer drug target, which could be employed to construct HSP90 inhibitors-
based drug conjugates for selective tumor therapy. Herein, a series of 4-(1H-1,2,3-triazol-1-yl)benzamides were rationally
designed, synthesized as HSP90 inhibitors, and their structures were characterized by 1H NMR, 13C NMR, and HR-MS.
Preliminary HSP90 binding assay showed that compounds 6b, 6l, 6m, 6n, 6t, and 6u exhibited significant HSP90α bind-
ing affinity. Among these selected compounds, 6u displayed the most potent anti-proliferative activities and particularly
in Capan-1 cell line. Molecular modeling studies also confirmed possible mode of interaction between 6u and the binding
sites of HSP90 by hydrogen bond and hydrophobic interactions. Above all, these encouraging data indicated that 6u could
be used as a HSP90 inhibitor for further study and helped the recognition of the 4-(1H-1,2,3-triazol-1-yl)benzamide motif
as a new scaffold for HSP90 inhibitors.
Graphical abstract
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240 Molecular Diversity (2023) 27:239–248
attention as a therapeutic target for cancer treatment [2–4]. accumulates and is retained in tumors, resulting in a sus-
HSP90 comprises approximately 1%-3% of the cellular tained release of SN-38 [17–19]. We previously reported two
proteins and overexpresses up to tenfold under physiologic highly efficient tumor-targeting fluorescent probes NP-001
stress [5]. Presently, HSP90 has been identified as four iso- and Probe 2, which were integrated with HSP90 inhibitors
forms, including HSP90α, HSP90β, GRP94, and TRAP1. and 4-hydroxy-1,8-naphthalimide. NP-001 and Probe 2
It is essential for the cell viability, ATP-dependent folding, have shown a relatively longer retention time in tumor due
and assembling of its client proteins [6, 7]. To date, many to the binding to HSP90 [14, 20]. Based on these results,
HSP90’s clients, including PARP, Aurora A, PI3K, BRD4, an HSP90 inhibitor–SN-38 conjugate (18b) was also devel-
hTERT, and the estrogen/androgen receptors, have been oped, exhibiting superior antitumor activity and low toxicity
involved in tumorgenesis [8–11]. It has been shown that the in HCT116 and Capan-1 xenograft models [21]. Inspired by
natural products geldanamycin, radicicol, and their deriva- these results, further optimization and identification of novel
tives were known to be active in inhibition of HSP90, lead- HSP90 inhibitors, which could be employed in HSP90 drug
ing to degradation of client proteins by the ubiquitin–pro- conjugates, appear as an interesting challenge.
teasome pathway, which marked the beginning of the era Many researches indicated that core structures triazole
of HSP90 inhibitors [12, 13]. Recently, a large number [22–24] or benzamide [25–27] in HSP90 inhibitors would
of HSP90 inhibitors based on varied scaffolds have been contribute to improved efficacy and safety profile. These
reported. Most of them were reported to bind the N-terminal HSP90 inhibitors showed notable anticancer activities
ATP-binding pocket of HSP90, including the triazole scaf- in vitro and in vivo. Docking simulations suggested that the
fold and benzamide scaffold (Fig. 1) [14]. Unfortunately, triazoles and benzamide structure could penetrate the HSP90
none of them have been brought into market, because of ATP-binding site and form hydrogen bonds and hydrophobic
problematic off-target effects and related toxicities, such contacts with the amino acid residues. In this research, in
as ocular toxicities, excess hepatotoxicity, which compro- order to obtain more potent HSP90 inhibitors, a series of
mised their efficacy and led to resistance and metastasis [15]. 4-(1H-1,2,3-triazol-1-yl)benzamides (6a–6u) combined with
Therefore, it is urgent to find a new method to apply these triazole or benzamide structures were rationally designed
inhibitors. and synthesized (Scheme 1), of which their HSP90 bind-
Recently, many efforts have been focused on developing ing affinity and anti-proliferative activities against different
HSP90 inhibitors-based drug conjugates, which employed cancer cell lines were evaluated. Among them, compounds
HSP90 inhibitors as potential tumor-targeting ligands for 6u showed acceptable HSP90α binding affinity and potent
selective tumor chemotherapy. In these conjugates, HSP90 in vitro antitumor activity. Molecular modeling studies also
inhibitors were conjugated with fluorescent molecules or displayed possible mode of interaction between 6u and the
drugs through various linkers, which could improve the binding sites of HSP90.
delivery of the fluorescent molecules or drugs into tumor
cells via eHSP90-mediated endocytosis (Fig. 2) [14, 16–21]. Chemistry
Crowe, L. B. et al. has reported a cell impermeable far-red
fluorophore-tagged HSP90 inhibitor HS-131, which high- HSP90 inhibitors 6a–6u were synthesized using the route
lights the therapeutic relevance of selectively targeting summarized in Scheme 2. The phenyl hydrazine intermedi-
HSP90 internalization [16]. Tarveda Therapeutics also has ate (2) was prepared from commercially available 2,4-dif-
discovered a miniature drug conjugate PEN-866, which links luorobenzonitrile (1) via nucleophilic substitution with
a HSP90 inhibitor to SN-38 cytotoxic payload. PEN-866 hydrazine in methanol at reflux. Subsequently, intermediate
N
O N N
O CF3
N
HO N
N N N
N N
HO O O N
HO N O
N N NH2 O
N H
N OH OH N N HN H2 N
H2N O
Fig. 1 Typical HSP90 inhibitors with triazole scaffold and benzamide scaffold
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Molecular Diversity (2023) 27:239–248 241
N O
N
N
O NH
N O N SO3H
H O
O H
H2 N O HO N
O N
N O
+ H O OH
- O N O
N OH
SO3
HS-131 NP-001
O
N
OH
HO
N N O HO
O N
N O
O O
N O
HO N O OH O N HN N
N
N OH O
HO O O
O
PEN866 18b
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242 Molecular Diversity (2023) 27:239–248
Table 1 HSP90 binding affinity of 6a–6u and 17-AAG Table 2 Anti-proliferative activities of selected compounds
Compound Anti-proliferative activities IC50 (nM)a
A549 HCT116 MCF-7
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Molecular Diversity (2023) 27:239–248 243
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Molecular Diversity (2023) 27:239–248 245
4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tetrahydro‑1H‑benzo[d] 2‑((cyclopropylmethyl)amino)‑4‑(6,6‑dime ‑
[1,2,3]triazol‑1‑yl)‑2‑(hexylamino)benzamide (6c) Yellow thyl‑4‑oxo‑4,5,6,7‑tetrahydro‑1H‑benzo[d][1,2,3]tria‑
solid. Yield: 50%. 1H NMR (400 MHz, C DCl3) δ 8.00 (d, zol‑1‑yl)benzamide (6g) Yellow solid. Yield: 68%. 1H NMR
J = 7.5 Hz, 1H), 7.71 (d, J = 6.0 Hz, 1H), 7.69–7.59 (m, (400 MHz, CDCl3) δ 7.99–7.94 (m, 2H), 7.69–7.56 (m, 2H),
2H), 7.41 (d, J = 1.4 Hz, 1H), 7.17 (dd, J = 7.5, 1.5 Hz, 7.40 (d, J = 1.5 Hz, 1H), 7.21 (dd, J = 7.5, 1.5 Hz, 1H), 3.27
1H), 3.29 (td, J = 7.1, 6.0 Hz, 2H), 2.69 (d, J = 21.4 Hz, (dd, J = 6.9, 6.0 Hz, 2H), 2.68 (d, J = 34.8 Hz, 4H), 1.76–
4H), 1.67 (p, J = 7.1 Hz, 2H), 1.46–1.25 (m, 6H), 1.08 (s, 1.71 (m, 1H), 1.67–1.63 (m, 2H), 1.17–1.13 (m, 2H), 1.09
6H), 0.95–0.77 (m, 3H). 13C NMR (100 MHz, CDCl3) δ (s, 6H). 13C NMR (100 MHz, CDCl3) δ 193.18, 168.88,
193.54, 169.04, 169.02, 137.69, 133.88, 113.34, 105.35, 147.12, 137.53, 134.22, 131.08, 115.59, 113.96, 105.90,
49.35, 44.33, 38.18, 35.36, 31.09, 29.07, 28.12, 27.36, 49.35, 47.87, 38.22, 35.36, 27.96, 16.48, 4.47. HR-MS
22.18, 14.11. HR-MS (m/z) (ESI), calcd for C21H29N5O2 (m/z) (ESI), calcd for C19H24N5O2 [M + H]+: 354.1885;
[M + H]+: 384.4960; found: 384.4962. Melting point: found: 354.1889. Melting point: 217–219 ℃.
245–247 ℃.
2‑(cyclobutylamino)‑4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tetrahy‑
4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tetrahydro‑1H‑benzo[d] dro‑1H‑benzo[d][1,2,3]triazol‑1‑yl)benzamide(6h) Yellow
[1,2,3]triazol‑1‑yl)‑2‑((2‑methoxyethyl)amino)benzamide solid. Yield: 64%. 1H NMR (400 MHz, DMSO-d6) δ 8.55
(6d) Yellow solid. Yield: 58%. 1H NMR (400 MHz, C DCl3) (d, J = 6.0 Hz, 1H), 8.04 (s, 1H), 7.84 (d, J = 8.4 Hz, 1H),
δ 8.34–8.12 (m, 1H), 7.96 (d, J = 7.5 Hz, 1H), 7.61 (s, 2H), 7.41 (s, 1H), 6.81 (d, J = 8.4 Hz, 1H), 6.74 (s, 1H), 3.97
7.39 (d, J = 1.6 Hz, 1H), 7.21 (dd, J = 7.5, 1.5 Hz, 1H), (q, J = 7.7, 7.1 Hz, 1H), 3.01 (s, 2H), 2.41 (d, J = 7.6 Hz,
3.78–3.57 (m, 4H), 3.36 (s, 3H), 2.69 (d, J = 34.3 Hz, 4H), 2H), 1.82 (td, J = 18.1, 8.4 Hz, 4H), 1.36–1.13 (m, 3H), 1.05
1.10 (s, 6H). 13C NMR (100 MHz, CDCl3) δ 193.18, 168.86, (s, 6H). 13C NMR (100 MHz, DMSO-d6) δ 189.72, 170.53,
147.28, 137.53, 134.22, 131.09, 115.25, 113.96, 105.37, 149.18, 144.68, 141.03, 138.42, 130.66, 114.47, 51.87,
70.86, 58.74, 49.17, 44.72, 38.33, 35.36, 27.96. HR-MS 46.92, 35.48, 34.29, 30.24, 27.55, 14.97. HR-MS (m/z)
(m/z) (ESI), calcd for C18H24N5O3 [M + H]+: 358.4140; (ESI), calcd for C19H24N5O2 [M + H]+: 354.1882; found:
found: 358.4138. Melting point: 225–227 ℃. 354.1884. Melting point: 225–227 ℃.
4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tetrahydro‑1H‑benzo[d] 2‑(cyclopentylamino)‑4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tet‑
[1,2,3]triazol‑1‑yl)‑2‑((2‑(methylsulfonyl)ethyl)amino)ben‑ rahydro‑1H‑benzo[d][1,2,3]triazol‑1‑yl)benzamide (6i) Yel-
zamide (6e) Yellow solid. Yield: 58%. 1H NMR (400 MHz, low solid. Yield: 63%. 1H NMR (400 MHz, DMSO-d6) δ
CDCl3) δ 8.27 (t, J = 7.3 Hz, 1H), 8.00 (d, J = 7.5 Hz, 1H), 8.50 (d, J = 6.5 Hz, 1H), 8.02 (s, 1H), 7.83 (d, J = 8.4 Hz,
7.67 (s, 2H), 7.41 (d, J = 1.4 Hz, 1H), 7.16 (dd, J = 7.5, 1H), 7.36 (s, 1H), 6.88 (d, J = 2.1 Hz, 1H), 6.78 (dd, J = 8.3,
1.5 Hz, 1H), 3.70 (q, J = 7.2 Hz, 2H), 3.28 (t, J = 7.1 Hz, 2.1 Hz, 1H), 3.85 (q, J = 6.2 Hz, 1H), 3.02 (s, 2H), 2.01 (dq,
2H), 2.94 (s, 3H), 2.81–2.67 (m, 2H), 2.67 (s, 2H), 1.08 (s, J = 12.6, 6.4 Hz, 2H), 1.64 (ddd, J = 25.2, 10.6, 5.2 Hz, 4H),
6H). 13C NMR (100 MHz, CDCl3) δ 193.54, 169.02, 145.29, 1.45 (dq, J = 12.0, 5.9 Hz, 2H), 1.24 (d, J = 6.0 Hz, 1H),
137.75, 137.20, 134.67, 131.09, 115.89, 112.78, 105.45, 1.05 (s, 6H). 13C NMR (100 MHz, DMSO-d6) δ 189.72,
54.60, 48.90, 41.21, 39.43, 38.15, 35.34, 28.19. HR-MS 170.67, 150.06, 144.71, 141.01, 138.39, 130.67, 114.36,
(m/z) (ESI), calcd for C18H24N5O4S [M + H]+: 406.1506; 108.11, 106.14, 52.96, 51.88, 35.47, 34.30, 32.68, 27.56,
found: 406.1504. Melting point: 228–229 ℃. 23.53. HR-MS (m/z) (ESI), calcd for C20H26N5O2 [M + H]+:
368.2042; found: 368.2048. Melting point: 228–229 ℃.
2‑((1,3‑dimethoxypropan‑2‑yl)amino)‑4‑(6,6‑dime ‑
thyl‑4‑oxo‑4,5,6,7‑tetrahydro‑1H‑benzo[d][1,2,3]tria‑ 2‑(cyclohexylamino)‑4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tetrahy‑
zol‑1‑yl)benzamide (6f) Yellow solid. Yield: 65%. 1H NMR dro‑1H‑benzo[d][1,2,3]triazol‑1‑yl)benzamide (6j) Yellow
(400 MHz, CDCl3) δ 7.96 (d, J = 7.5 Hz, 1H), 7.65 (s, 2H), solid. Yield: 52%. 1H NMR (400 MHz, DMSO-d6) δ 8.00
7.51 (d, J = 1.6 Hz, 1H), 7.31 (d, J = 11.7 Hz, 1H), 7.15 (dd, (d, J = 7.5 Hz, 1H), 7.71–7.59 (m, 2H), 7.51–7.43 (m, 2H),
J = 7.5, 1.5 Hz, 1H), 3.84 (dp, J = 11.7, 7.0 Hz, 1H), 3.44 7.14 (dd, J = 7.4, 1.5 Hz, 1H), 3.43 (dp, J = 11.0, 7.0 Hz,
(dd, J = 12.4, 7.0 Hz, 4H), 3.22 (s, 6H), 2.82–2.68 (m, 2H), 1H), 2.70 (d, J = 23.4 Hz, 4H), 1.62 (q, J = 7.2 Hz, 4H),
2.67 (d, J = 2.9 Hz, 2H), 1.08 (s, 6H). 13C NMR (100 MHz, 1.53–1.47 (m, 3H), 1.42–1.35 (m, 3H), 1.08 (s, 6H). 13C
CDCl3) δ 193.95, 169.04, 145.59, 138.19, 137.20, 134.67, NMR (100 MHz, DMSO-d6) δ 193.54, 169.02, 145.42,
130.73, 116.39, 112.78, 107.17, 70.72, 58.07, 54.97, 137.69, 133.88, 130.74, 116.35, 113.34, 107.36, 52.45,
48.84, 38.42, 35.36, 28.18. HR-MS (m/z) (ESI), calcd for 49.35, 38.36, 35.36, 33.39, 28.18, 26.04, 25.03. HR-MS
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246 Molecular Diversity (2023) 27:239–248
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Molecular Diversity (2023) 27:239–248 247
1H), 3.83 (s, 3H), 2.81–2.67 (m, 2H), 2.67 (s, 2H), 1.08 (s, compounds and FITC-labeled geldanamycin were added to
6H). 13C NMR (100 MHz, DMSO-d6) δ 193.95, 168.95, each reaction well. Recombinant HSP90 protein was diluted
148.53, 143.41, 138.33, 136.61, 134.32, 133.71, 130.76, with the reaction buffer (20 mM 4-(2-hydroxyethyl)-1-piper-
123.99, 118.96, 112.58, 110.06, 56.01, 48.84, 38.42, 35.36, azineethanesulfonic acid pH 7.3, 50 mM KCl, 5 mM M gCl2,
22H24N5O3 [M + H]+:
28.13. HR-MS (m/z) (ESI), calcd for C 20 mM Na2MoO4, 0.01% Triton X-100, 100 μg/mL bovine
406.1834; found: 406.1836. Melting point: 255–257 ℃. serum albumin, and 2 mM dithiothreitol) and added to each
well to get the final concentration of 22.2 nM. The enzyme
(R)‑4‑(6,6‑dimethyl‑4‑oxo‑4,5,6,7‑tetrahydro‑1H‑benzo[d] reaction was initiated as soon as the purified HSP90 was
[1,2,3]triazol‑1‑yl)‑2‑((1‑phenylethyl)amino)benzamide added. After incubation for 60 min at 4 °C, the fluorescent
(6s) Yellow solid. Yield:52%. 1H NMR (400 MHz, polarization of the samples was determined by a microtiter-
DMSO-d6) δ 8.01 (d, J = 7.5 Hz, 1H), 7.71–7.59 (m, 2H), plate reader (Envision, PerkinElmer).
7.53 (d, J = 1.5 Hz, 1H), 7.40 (tt, J = 1.6, 0.9 Hz, 1H),
7.39 (dt, J = 1.7, 0.9 Hz, 1H), 7.32–7.30 (m, 1H), 7.29 (d,
Cytotoxicity assay
J = 0.7 Hz, 1H), 7.28–7.27 (m, 1H), 7.26–7.23 (m, 1H),
7.15 (dd, J = 7.5, 1.5 Hz, 1H), 4.56 (dd, J = 9.5, 7.9, 6.8,
Cells were seeded in 96-well plates at proper density in
5.9 Hz, 1H), 2.80–2.68 (m, 2H), 2.67 (d, J = 4.4 Hz, 2H),
growth media. After 24 h, a range of concentrations of
1.55 (d, J = 6.8 Hz, 3H), 1.08 (d, J = 25.1 Hz, 6H). 13C NMR
the test compounds were added and the plates were incu-
(100 MHz, DMSO-d6) δ 193.95, 169.06, 145.82, 136.61,
bated at 37 °C for 72 h. Cell proliferation was determined
134.32, 130.74, 128.42, 127.54, 127.14, 117.38, 112.81,
by SRB assay. IC50 values were calculated by concentra-
107.28, 56.61, 48.84, 38.36, 35.36, 28.19, 22.15. HR-MS
tion–response curve fitting using a SoftMax probased four-
(m/z) (ESI), calcd for C 23H26N5O2 [M + H]+: 404.2042;
parameter method.
found: 404.2042. Melting point: 250–252 ℃.
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248 Molecular Diversity (2023) 27:239–248
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