GOOD MORNING
AMINO ACID METABOLISM
 Anabolism(synthesis)
 Catabolism
 Functions
 Disorders
INBORN ERRORS OF
METABOLISM
Essential amino acids
 IPL Live Telecast in MTV
 I
 Love
 To
 Taste
 Leg
 Piece
 Very
 Much
Essential amino acids
 IPL Live Telecast in MTV
 I
 Love
 To
 Take
 LOLLY
 POP
 Very
 Much
 Glutamate
 Glutamine
 Alanine
 Aspartate
 Aspargine
 Tyrosine
AMINO ACID
Carbon skeleton NH3
Glucose
ketone bodies
UREA
Acetyl coA
 All aromatic aminoacids
 Isoleucine
 Leucine
 Lysine
α ketoglutarate
 Glutamate
 Glutamine
 Semi essential aminoacids
 Proline
Succinyl coA
 Valine
 Isoleucine
 Methionine
Fumarate
 Phenylalanine
 Tyrosine
OxaloAcetate
 Aspartate
 Asparagine
Pyruvate
 Serine
 Alanine
 Cysteine
 Glycine
 Threonine
 Tryptophan
UREA CYCLE
Dr. V.N.Guhan
AMINO ACID
NH3
UREA
How ammonia is formed??
Detoxification??
How NH3 is formed??
 Catabolism of amino acids
 Purine & Pyrimidine catabolism
 Putrefaction
Transportation
 Pyruvate(muscle)
alanine
 α Ketoglutarate
glutamate
SIGNIFICANCE
 Catabolism of amino acids
 Synthesis of non essential amino acids
 Interconversion of aminoacids
 ALT – Liver diseases
 AST – Skeletal muscle disorders,
cardiac markers & liver diseases
GLUTAMINE SYNTHETASE
 Liver & kidney
 Urinary buffer
OXIDATIVE DEAMINATION
TRANSDEAMINATION
OGLUTAMATE
DEHYDROGENASE
MINOR PATHWAYS OF
DEAMINATION
 L amino acid oxidase
 D amino acid oxidase
 Mono amine oxidase
(MAO)
 Dehydratase
 Desulphydrase
 Histidase
L amino acids
Glycine & D amino acids
Tyrosine
Serine & threonine
Cysteine
Histidine
INTRODUCTION
Aminoacids
trans
deamination
NH3
UREA
UREA
CYCLE
SITE
 LIVER
 Partly in mitochondria & partly in
cytoplasm
PATHWAY
 NH3 + CO2 + NH3
 2ATPs
 Carbamoyl phosphate CPS I
ORNITHINE + CAP
OTC
CITRULLINE
Ornithine
transporter
cytoplasm
Citrulline
ATP
AMP
Argininosuccinate
ASL
fumarate
Arginine
Aspartic
acid
ASS
Malate
OA
Arginine
arginase
Urea + ornithine
ENERGETICS
 CPS I – 2ATPs are utilised
 ASS – 2ATPs are utilised
 TOTAL = 4 ATPs are utilised
 But fumarate recycle – 1NADH =
2.5ATPs are generated
 So net ATP utilisation is 4-2.5 =
1.5ATPs
REGULATION
 CPS I – rate limiting enzyme
 Allosteric regulation
 N Acetyl Glutamate
 NAG synthase
 Arginine
 Protein catabolism
protein rich diet
starvation
DM
thyroid diseases
 Compartmentalisation
Urea cycle enzymes
UREA CYCLE DISORDERS
 CPS I
 OTC
 Ornithine transporter
 ASS
 ASL
 ARGINASE
 Organic acidurias &
beta oxidation
disorders
 Liver disorders
Hyperammonemia type 1
Hyperammonemia type 2
HHH syndrome
Citrullinemia
Argininosuccinic acidemia
Hyperargininemia
Hepatic encephalopathy
(hepatic coma)
Good morning
Terminal
UREA CYCLE
Aminoacids
trans
deamination
NH3
UREA
UREA
CYCLE
Pyruvate Glutamate
AKG
Alanine Glutamine
Glutamate
Glutamate
AKG + NH3
NH3 + CO2 → CAP
+ Ornithine
Citrulline
+ Aspartic acid
Argininosuccinate
- Fumarate
Arginine
- Ornithine
UREA
Clinical Significance
 CPS I:
Hyperammonemia type I
NAG synthetase deficiency
 OTC:
Hyperammonemia type II
X-linked recessive
orotic aciduria
 Ornithine transporter:
ORNT1
Hyperammonemia
Hyperornithinemia
Homocitrullinuria
HHH syndrome
 ASS:
citrullinemia
high km
Citrin transporter defect – Type 2
 ASL:
Argininosuccinic aciduria
Trichorrhexis nodosa
 Arginase:
hyperargininemia
lysine-cystinuria
Ammonia toxicity
 Decreased AKG
 Decreased glutamate
 Increased glutamine
ATP deficient
Decreased neurotransmitter
(GABA)
Edema of brain cells
Encephalopathy
Coma
Respiratory alkalosis
 Diagnosis:
 Plasma ammonia - elevated
Normal – 15-45µg/dl(10-40µmol/L)
 Tandem MS
 Neonatal screening
Treatment
 Low protein diet
(arginine)
 Frequent feeds
 Bowel disinfection using antibiotics
 Lactulose
 Benzoate & phenylacetate
 CRISPR/Cas9 – gene editing
Case scenario
 Newborn child with encephalopathy
and respiratory alkalosis
 Ammonia levels were elevated
 Low citrulline
 Urine orotic acid – Normal
 Liver biopsy – NAG synthase
 Diagnosis???
GLYCINE METABOLISM
Introduction:
 Simple
 Non essential
 Glucogenic
 Creatine/creatinine, glutathione, heme & nucleotide
synthesis
 Non ketotic hyperglycinemia
 Glycinuria
 Hyperoxaluria
Synthesis
CO2
NH3
methylene THFA
Glycine
Glycine synthase
complex
Glyoxalate glutamate/alanine
transaminase
Glycine αKG/pyruvate
Catabolism
CO2
NH3
methylene THFA
Glycine
Glycine synthase
complex
Glycine decarboxylase
Amino methyl transferase
Methylene THFA synthase
Lipoamide dehydrogenase
PLP
THFA
Lipoamide
NAD
Glyoxalate glutamate/alanine
transaminase
Glycine αKG/pyruvate
GLYCINE METABOLISM
 Synthesis
 Catabolism
 Functions
 Disorders
SYNTHESIS
SYNTHESIS
 CO2
 NH3
 methylene THFA
 Glycine synthase
complex
 Serine
(hydroxy methyl transferase)
 Threonine
(Aldolase)
 Glyoxalate
(Transaminase)
 Choline
CATABOLISM
 Glycine cleavage system
 Serine
Pyruvate
Gluconeogenesis
 Glyoxalate
Oxalic acid
Glycolic acid
Functions
Creatine synthesis:
glycine, arginine & methionine
kidney / pancreas
 Lohmann’s reaction
Glutathione :
glutamate + cysteine + glycine
 Gamma glutamyl cysteine
 Glutathione
 Free radical scavenging – RBC membrane
 Detoxification
 Absorption of amino acids
 Reduction reactions
 Heme synthesis:
glycine + succinyl coA
 Purine nucleotide synthesis
C4, C5 & N7
 Neurotransmitters
 Conjugating agent
bile acids & benzoic acid
Clinical significance
 Non ketotic
hyperglycinemia
 Primary hyperoxaluria
type I
 Primary hyperoxaluria
type II
 Glycinuria
 Glycine cleavage
system
 Transaminase
 Glyoxalate reductase
 Tubular reabsorption
Thank U
Amino
acid
Synthesis Catabolism Functions Disorders
Glycine GSC
Serine, threonine,
Glyoxalate &
choline
Glucogenic
Serine → Pyr
GCS
Transamination
Creatine,purine,
Glutathione,
heme, collagen,
Neurotransmitter
NKHG
Hyperoxaluria
Glycinuria
TYROSINE METABOLISM
 Introduction
 Anabolism
 Catabolism
 Functions
 Clinical significance
Introduction
 Aromatic
 Non polar
 Non essential
 Partly glucogenic & partly ketogenic
 Catecholamine, thyroxine & melanin synthesis
 PKU
 Albinism
 Alkaptonuria
 Tyrosinemia
Synthesis
Phe hydroxylase
Catabolism
Tyrosine
transaminase
p-hydroxy phenyl pyruvate
hydroxylase
Homogentisic acid
oxidase
Maleyl acetoacetate
isomerase
Fumaryl acetoacetate
hydrolase
Fumarate + acetoacetate
(glucogenic) (ketogenic)
Catecholamines
Tyrosine
tyrosine hydroxylase
DOPA
decarboxylase
Dopamine
hydroxylase
Norepinephrine
NMT
Epinephrine
COMT
Metanephrine
MAO
VMA
Melanin
Tyrosine
tyrosinase
DOPA
Dopaquinone
Indolequinone
Melanin
Thyroid hormones
Tyrosine
I2
MIT DIT
PKU
 Phenylalanine hydoxylase
(classical or type 1 PKU)
 THBP synthase or reductase deficiency
Biochemical alterations
Increased
phenylalanine
 Phenyl pyruvate
 Phenyl acetate
 Phenyl lactate
 Mousy odour in
sweat & urine
Decreased tyrosine
 Mental retardation
 Delayed
developmental
milestones
 Seizures
 Psychosis
 Hypopigmentation
Diagnosis
 Ferric chloride test
 DNPH test
 Guthrie test
(Bacillus subtilis)
 Blood
phenylalanine
 DNA study
Treatment
 Low phenylalanine
 High tyrosine
Tyrosinemia
 Type 1 – hydrolase
 Type 2 – transaminase
(Richner-Hanhart syndrome)
 Type 3 – hydroxylase
 Neonatal – hydroxylase
 Hawkinsinuria
Type 1 tyrosinemia
 Cause: FA Hydrolase
 Effects:
FA and succinyl acetone
Hepatorenal tyrosinemia
ALA dehydratase
 Diagnosis:
succinyl acetone levels
 Treatment:
Nitisinone
Tyrosinemia
 Type 1 – hydrolase
 Type 2 – transaminase
(Richner-Hanhart syndrome)
 Type 3 – hydroxylase
 Neonatal – hydroxylase
 Hawkinsinuria
Alkaptonuria
 Garrod’s tetrad
 Homogentisate oxidase
 Black colour urine
 Ochronosis
 Black urine
 Ferric chloride test
 Benedict’s test
 Blood/urine homogentisic acid
Albinism
 Tyrosinase
 Tyrosinase +ve type
 Copper deficiency
 Photosensitivity
 Photophobia and decreased vision
 Leucoderma
 Malignant melanoma
 Graying of hair
 Parkinson’s disease
 Pheochromocytoma
1. Alkaptonuria
2. Albinism
3. Hydroxymethyl transferase
4. Aldolase
5. Glyoxalate transaminase
6. Glycine decarboxylase
7. Glyoxalate reductase
8. Glyoxalate oxidase
9. Cysteine
10. Arginine
a) Primary hyperoxaluria type I
b) Primary hyperoxaluria type II
c) Creatine
d) Glutathione
e) Non ketotic hyperglycinemia
f) Oxalic acid
g) Ochronosis
h) Copper
i) Serine↔glycine
j) Spectrophotometric
estimation
k) Threonine→glycine
Tryptophan metabolism
Introduction:
 Aromatic amino acid
 Non polar
 Essential
 Glucogenic & ketogenic
 Serotonin, melatonin & Niacin
 Hartnup’s disease
 Carcinoid tumour
 Pellagra
Catabolism
Tryptophan
tryptophan pyrrolase
N Formyl kyneurinine
THFA Formylase
Kyneurinine
hydroxylase
3 OH kyneurinine
kyneurinase
alanine
3 OH anthranilic acid
Acetoacetyl coA
Functions
 Serotonin
Tryptophan
hydroxylase
THBP
5 hydroxy tryptophan
decarboxylase
PLP
5 hydroxytryptamine
(serotonin)
MAO
5HIAA
 5HT receptors
 Mood stabiliser
 Regulates sleep & Appetite
 Temperature regulation
 Memory & learning
 Intestinal motility
 Coagulation & Wound healing
 Smooth muscle constriction
 vasoconstriction
MAO inhibitors
SSRIs
TCAs
Melatonin:
Serotonin
acetylase
Acetyl serotonin
methyl transferase
Melatonin
 Pineal gland
 Sleep-wake cycle
 Antioxidant property
Niacin Synthesis
Tryptophan
Fe2+
Folic acid
B2
B6
3-OH anthranilic acid
Quinolinic acid
QPRTase
Niacin mono nucleotide
Desamido NAD
NAD
(Nicotinamide Adenine Dinucleotide)
Clinical significance
Pellagra
Carcinoid tumours
 Argentaffinoma
 Small intestine & appendix
 Excess serotonin
 Pellagra
 Urinary 5HIAA levels
 > 25mg/day
Hartnup’s disease:
 Defective transporter
(intestine & kidney)
 Pellagra
 Urinary tryptophan
 Urinary indole compounds
(Obermeyer’s test)
Glutamic acid
 Non essential amino acid
 Liver & kidney
 Urinary buffer
Histidine
FIGLU
Glutamic acid
Proline Arginine
Glutamate semialdehye
GSDH
NADH
Glutamate
OXIDATIVE DEAMINATION
OGLUTAMATE
DEHYDROGENASE
GABA shunt
Functions
 Excitatory neurotransmitter
NMDA receptor
opens Ca2+
channel
 GABA
opens cl-
channel
inhibitory neurotransmitter
 Glutathione
 Glutamine
 Arginine
 Proline
 Histidine
 NAG – regulates urea
cycle
Clinical significance
 Vitamin B6 deficiency
Glutamic acid → GABA
 Seizures
 Alzheimer’s disease
Sodium
valproate
Glutamine
 Non essential amino acid
GLUTAMINE
SYNTHETASE
Functions
 Trapping of ammonia in brain
 Urinary buffer
 Purine & pyrimidine synthesis
 Aminosugars
 NAD
 Asparagine
 Detoxification
Aspartic acid
 Non essential
 Glucogenic
Functions
 Purine & pyrimidine synthesis
 Urea cycle
 Glycolysis
 Gluconeogenesis
Clinical significance:
 dicarboxylic amino aciduria
Malate
aspartate
shuttle
Asparagine
 Non essential
 Glucogenic
 Glycosylation of proteins
 Asparaginase - ALL
Gln
Amino
acid
Synthesis Catabolism Functions Disorders
Tyrosine Non Essential
Phenylalanine
G & K
Fumarate &
acetoacetate
Catecholamines
Melanin
thyroid hormones
Tyramine
PKU
Albinism
Alkaptonuria
Tyrosinemia
Glutamate Non essential
αKG (major)
Gln, His, Arg &
Proline
Glucogenic
αKG
GABA shunt
γ-carboxylation
Urea cycle
Neurotransmitter
GABA, Glutathione
Vitamin B6
deficiency &
seizures
Glutamine Non essential
Glutamate
(Glutamine
synthetase)
Glucogenic
Glutamate
(Glutaminase)
Purine & pyrimidine
Aminosugars,
Asn, NAD
Detoxification
-
Aspartate Non essential
Oxalacetate
Glucogenic
Oxaloacetate
Purine & Pyrimidine
Urea cycle
Malate-aspartate
Dicarboxylic
aciduria
Asparagine Non essential
Aspartate
(Asparagine
synthetase)
Glucogenic
Aspartate
(Asparaginase)
Site for
Glycosylation
Asparaginase
– Treatment
of ALL
Semi essential amino acids
Histidine
 Semi Essential amino acid
 Glutamate
 PRPP
 Glutamine
 ATP
 Glucogenic
HISTIDINE
Catabolism
Glutamic
acid
Functions
 Buffering action
 Acid base catalysis
 Metallo proteins
Hb
 Antioxidant property
 Histamine
 Ergothioneine
 Carnosine
 Anserine
 1C pool
 Mediates allergic reactions
vasodilation
bronchoconstriction
nasal congestion
 Sleep wake cycle
 Gastric acidity
Clinical significance
 Histidase
Histidinemia
 Urocanase
Urocanic aciduria
Thank U
SULPHUR CONTAINING AMINO
ACIDS
 Methionine
 Essential
 Glucogenic
 Transmethylation reaction
 Cysteine
 Non essential
 Glucogenic
 Glutathione, taurine, coA
Homocystinuria
Cystinuria
Cystinosis
Oasthouse syndrome
 Synthesis of cysteine/
catabolism of methionine
Homocysteine
Serine
Cystathionine
Homoserine Cysteine
trans-
amination
α keto hydroxy butyrate
oxidative
decarboxylation
propionyl coA
Catabolism of cysteine
H2S
Thiocyanate
Thiosulphate
PAPS
 Sulphotransferase
 GAGs
 Sulpholipids
 Detoxification
Functions
 Transmethylation reaction

Glutathione
 Glutamate + cysteine + glycine
Free radical scavenging
Detoxification
Coenzyme A:
pantothenic acid + cysteine
Taurine:
 conjugation of bile acids
 Inhibitory neurotransmitter
 Nerve conduction & muscle contraction
Clinical significance
Homocystinuria:
 Normal: 5-15µmol/L
 Cystathionine synthase
 B6 , B12 & folic acid
 N5N10 methylene THFA
reductase
 Hypothyroidism
 Smoking & alcohol
 Increased risk of atherosclerosis
interferes with collagen cross linking
free radical production
activation of Hageman’s factor
 Skeletal deformities( Marfan like features)
 Ectopia lentis
 Mental retardation
 Neural tube defects
 Blood or urine homocysteine
Amino
acid
Synthesis Catabolism Functions Disorders
Methionine Essential Glucogenic
Succinyl coA
(Met→Hcy→Hser
→propionyl coA)
Transmethylation
reactions
(epinephrine/
choline/
melatonin/
creatine)
Homocystinuria
Cystinuria
Cystinosis
Hypermethion
inemia
Oasthouse
syndrome
Cysteine Non essential
Methionine &
serine
Glucogenic
Pyruvate
PAPS
Glutathione
coA
Taurine
Cystinuria:
 Defective reabsorption of COAL
 Renal calculi
 Cyanide – nitroprusside test
 Plenty of fluids
 Alkaliniser
Cystinosis:
 Cystinosin
 Kidney – Fanconi syndrome
 Cornea – photophobia
 Liver, spleen, WBCs
 WBC cystine levels
 Cystathioninuria – cystathionase deficiency
 Hypermethioninemia – MAT deficiency
 Oasthouse syndrome – methionine reabsorption
THANK U
Arginine
Arginine
Ornithine
Glutamate semi aldehyde
Glutamate
Glucogenic amino acid
Synthesis
Glutamate
Glutamate semialdehyde
Ornithine
Arginine
Urea
cycle
Functions
 Urea synthesis
 Polyamine
 Proline & Glutamate synthesis
 Creatine & creatinine
 Nitric oxide(NO
.
)
NOS
3 isoforms
Heme
FAD
FMN
NADPH
THBP
 CNS:
CRH, GHRH, LHRH
 Endothelium:
vasodilatation
pulmonary HT – NO inhalation
angina pectoris – nitroglycerine
erectile dysfunction – sildenafil
 Macrophages:
bactericidal
Shock
 GIT:
Intestinal motility
Polyamines
 Putrescine
Spermidine
Spermine
SAM
DSAM
MTA
 DNA stabilisation
 Replication
 Transcription
 Translation
 Cell proliferation.
Clinical significance:
 DFMO
ODC
Suicidal inhibition
Trypnosomiasis
Pneumocystis carnii
Disorders
Arginine
Argininase
Ornithine
transaminase
Glutamate semi aldehyde
Argininuria
Gyrate atrophy
of retina
HHH
syndrome
Proline
Glutamate
ATP
Glutamate semialdehyde
Pyrolline 5 carboxylate
Proline
Arginine
Ornithine
CATABOLISM
 Glucogenic
Proline
Dehydroproline
Glutamate semialdehyde
Glutamate
α KG
Functions
 Collagen
 Site of hydroxylation
Clinical significance:
 Hyperprolinemia type I -
 Hyperprolinemia type II -
Proline dehydrogenase
GS dehydrogenase
Serine
 Hydroxy amino acid
 Non essential amino acid
Catabolism
 Glucogenic
Functions
 Site of glycosylation
 Site of phosphorylation
covalent modification
 Serine protease
 Alanine synthesis
serine → pyruvate → alanine
 Cysteine synthesis
 Selenocysteine synthesis
Se + ATP → Se-P
Serine + Se-P → Selenocysteine
Cotranslational modification
Glutathione peroxidase
Deiodinase
Thioredoxin reductase
 Phospholipid synthesis
palmitoyl coA + serine
sphingosine
sphingophospholipids
3 X methyl
Serine ethanolamine choline
phosphatidyl
ethanolamine
phosphatidyl
choline
Phosphatidyl
serine Acetyl
choline
Clinical significance
 Azaserine
glutamine analogue
inhibits purine & pyrimidine synthesis
anti cancer drug
 Cycloserine
D - alanine analogue
inhibits bacterial cell wall synthesis
antibiotic
Threonine
 Hydroxy amino acid
 Essential amino acid
 Both glucogenic & ketogenic
Threonine
α keto butyrate
Propionyl coA
Succinyl coA
Threonine
Glycine +
acetaldehyde
THANK U
Amino
acid
Synthesis Catabolism Functions Disorders
Arginine Semi essential
Glutamate
Glu→GSA→Orn
→Arg
Glucogenic
Argininase
OTA
Urea cycle
Nitric oxide
Polyamines
Creatine
Proline & Glu
Argininuria
Gyrate
atrophy of
retina
Proline Non essential
Glutamate
Glu→GSA→Pro
Glucogenic
Proline DH
GSDH
Collagen -
structure
Hyperproline
mia – Type I &
II
Serine Non essential
3 – PG
Glycine
Glucogenic
Ser → pyruvate
GCS
Enz-action & Reg
Site for glycn
Gly/Ala/cys/Scys
SLs/GPLs/Ach
1C pool
Azaserine
Cycloserine
Threonine Essential G&K
Threonine
aldolase
Site of
phosphorylation
& Glycosylation
-
 Glycine
 Alanine
 Serine
 Threonine
 Glutamate
 Glutamine
 Aspartate
 Aspartamine
 Lysine
 Arginine
 Histidine
 Phenylalanine
 Tyrosine
 Tryptophan
 Proline
 Leucine
 Isoleucine
 Valine
 Cysteine
 Methionine
Amino
acid
Synthesis Catabolism Functions Disorders
Arginine Semi essential
Glutamate
Glu→GSA→Orn
→Arg
Glucogenic
Argininase
OTA
Urea cycle
Nitric oxide
Polyamines
Creatine
Proline & Glu
Argininuria
Gyrate
atrophy of
retina
Proline Non essential
Glutamate
Glu→GSA→Pro
Glucogenic
Proline DH
GSDH
Collagen -
structure
Hyperproline
mia – Type I &
II
Serine Non essential
3 – PG
Glycine
Glucogenic
Ser → pyruvate
GCS
Enz-action & Reg
Site for glycn
Gly/Ala/cys/Scys
SLs/GPLs/Ach
1C pool
Azaserine
Cycloserine
Threonine Essential G&K
Threonine
aldolase
Site of
phosphorylation
& Glycosylation
-
Alanine Non essential
Pyruvate
ALT
Glucogenic NH3 transport
Gluconeogenesis
(Glu- Ala cycle)
ALT – marker
for liver
diseases
Lysine
 Basic amino acid
 Essential
Catabolism
Lysine + αKG
Saccharopine
Glutamate
α Aminoadipate δ semialdehyde
α Aminoadipate
α ketoadipate
Glutaryl coA
Crotonyl coA
2 x Acetyl coA
Ketogenic & glucogenic
Functions
 Stabilises the structure
 Cross link formation (collagen)
 Histone
 Epigenetics
 Transaminase (PLP)
 Rhodopsin (11 cis retinal)
 Carnitine
 Cadaverine
Clinical significance
 Hyperlysinemia
AASS deficiency
hyperammonemia
SDH
saccharopinuria
 Glutaric aciduria
GCDH deficiency
basal ganglia
Branched chain amino acids
 Valine
 Leucine
 Isoleucine
 Essential amino acids
 Valine – Glucogenic
 Leucine – ketogenic
 Isoleucine – both
Glucogenic
ketogenic
ketogenic Glucogenic
Acetyl coA Succinyl
coA
Acetyl coA
Succinyl coA
Clinical significance
Maple syrup urine disease (MSUD)
 Autosomal recessive
 Branched chain ketoacid dehydrogenase
 Thiamine deficiency
 Ketoacidosis
 Mental retardation
 Burnt sugar smell in urine
 Rothera’s test, DNPH Test
 Tandem mass spectrometry
Isovaleric acidemia:
 Isovaleryl coA dehydrogrenase
ONE CARBON
METABOLISM
OBJECTIVES
 One carbon groups
 Carriers
 Sources
 Intercoversion
 Uses
 Clinical significance
ONE CARBON GROUPS
 Formyl (-CHO)
 Formimino (-CH=NH)
 Methenyl (-CH=)
 Methylene (-CH2–)
 Hydroxymethyl (-CH2OH)
 Methyl (-CH3)
 Carboxyl(-COO)
CARRIERS
1. Biotin
2. Vitamin B12
3. Folic acid
SOURCES
 Formyl
tryptophan
 Formimino
histidine
 Hydroxy methyl
choline
 Methylene
serine
glycine
INTERCONVERSION
USES
 Transmethylation reactions
 Purine & pyrimidine synthesis
 Glycine & serine metabolism
 Formyl met tRNA
DISORDERS
 Folate deficiency
 Folate trap
B12 deficiency
 Folate antagonists
SUMMARY
THANK U
ENTIRE CLASS
Classes
Exams
Other
routines……
A 10­
day­
old girl is being examined by
her pediatrician due to concerns raised
by her parents about the odd shape of
her eyes. Physical examination shows
no other overt abnormalities. Serum
studies show a methionine
concentration of 1175 μM (N <50 μM).
Based upon the findings in this infant,
which of the following enzymes is most
likely to be deficient?
ⓘ Start presenting to display the poll results on this slide.
A 2­
year­
old boy is brought to the
physician’s office for evaluation of
severe developmental delay. The
parents say that his urine has always
had a strange musty odor. Physical
examination shows the boy has fair
colored hair, pale skin, and pale blue
irises. Which of the following processes
is most likely deficient in this patient?
ⓘ Start presenting to display the poll results on this slide.
 . A 23­
year­
old woman is brought to the ER because of a 1­
hour
history of severe pain and coldness of her left leg. History taking
indicates that she dropped out of high school in the 10th grade due
to difficulty with comprehension. Intelligence testing demonstrated
her IQ to be 80 at that time. Her parents and two older siblings have
normal intelligence and have no history of these symptoms.
Physical examination shows mottling and loss of pulses in the left
lower extremity and foot. Arteriography of the left lower extremity
shows thrombosis of the femoral artery. This patient most likely has
a metabolic disorder involving which of the following amino acids?
 (A) Glycine
 (B) Leucine
 (C) Methionine
 (D) Phenylalanine
 (E) Tyrosine
 A physician is examining a pediatric patient brought i
n by his parents because they are disturbed by his pr
ogressive mood changes and apparent heightened
anxiety. Physical examination shows pellegra­like
skin eruptions and signs of cerebellar ataxia that
include unsteady gait and uncoordinated eye
movements. Serum and urinalysis show significant
aminoacidemia and aciduria. Measurement of urine
levels of which of the following would be most
informative for a correct diagnosis?
 (A) Alanine (B) Alloisoleucine (C) Glutamine (D) β­
Hydroxybutyrate (E) Tryptophan
 . A 5­
year­
old boy with severe intellectual impairment is brought
to the physician because of a 4­
week history of progressively
frequent generalized tonic­
clonic seizures. There is no available
record of newborn screening. He has blond hair and blue eyes.
Physical examination shows patches of dry, thickened skin on
his neck and inner creases of the elbows and knees. Serum
studies for amino acid concentrations are pending. Urine
studies show increased concentrations of phenylpyruvic and
phenyllactic acids. The activity of which of the following
enzymes is most likely defective in this patient?
 (A) Branched­
chain keto acid dehydrogenase
 (B) Dihydropteridine reductase
 (C) Homogentisate oxidase
 (D) Phenylalanine hydroxylase
 (E) Tyrosine aminotransferase
 A 1­
year­
old female is being treating in the Emergency
Department following a seizure. History indicates that the
child was born at home and did not undergo screening for
known congenital disorders. Blood work indicates
phenylalanine concentration to be 3.7 mg/dL (N = <2
mg/dL) and tyrosine to be 0.6 mg/dL (N = 0.8 ± 0.4 mg/dL).
Measurement of serum serotonin level shows it to be
abnormally low. A deficiency in which of the following would
most likely explain the observations in this patient?
 (A) Branched­
chain keto acid dehydrogenase
 (B) Dihydropteridine reductase
 (C) Phenylalanine hydroxylase
 (D) Propionyl­
CoA carboxylase
 (E) Tyrosine aminotransferase
 A 3­
month­
old infant is being examined in the emergency
department following a seizure. Blood work indicates the child
has a serum phenylalanine concentration of 650 μM (N = 30–60
μM). The attending physician places the infant on a low­
phenylalanine diet. Upon follow­
up 3­
days later the level of serum
phenylalanine is found to be reduced to 250 μM. However, while
at home the infant developed progressive movement disorders,
difficulty swallowing, seizures, and a fever. A defect in which of
the following enzymes would best explain the lack of a positive
outcome on the low phenylalanine diet?
 (A) Branched­
chain keto acid dehydrogenase
 (B) Dihydropteridine reductase
 (C) Phenylalanine hydroxylase
 (D) Tryptophan hydroxylase
 (E) Tyrosine hydroxylase
 A 5­
month­
old infant who has been experiencing lethargy,
recurrent vomiting, respiratory distress, and muscular
hypotonia is brought to the emergency room in a near
comatose state. Lab studies show serum pH of 7.27 (N =
7.35–7.45) and bicarbonate of 12 mEq/L (N = 22–26 mEq/L).
Further analysis finds elevated levels of methylmalonic acid in
both serum and urine. A deficiency in which of the following
enzymes would most likely allow for elimination of cobalamin
deficiency as the cause of the observations in this patient?
 (A) Malonyl­
CoA decarboxylase
 (B) Methionine synthase
 (C) Methylmalonyl­
CoA mutase
 (D) Methylmalonyl­
CoA racemase
 (E) Propionyl­
CoA carboxylase
 A 67­
year­
old woman is being examined by her physician with
complaints of chronic back, hip, and knee pain. Physical
examination finds bluishgrey macules over the cartilaginous
portions of her ears and on the sclera of her eyes. Past medical
history included an aortic stenosis. The patient reported that
when she sweats it seems to permanently stain her clothing.
She also stated that her urine seems to get darker if she does
not flush the toilet. These signs and symptoms are most likely
indicative of a defect in which of the following processes?
 (A) Aromatic amino acid catabolism
 (B) Bilirubin conjugation
 (C) Branched­
chain amino acid catabolism
 (D) Peroxisomal fatty acid α­
oxidation
 (E) Purine nucleotide catabolism
 A 1­
year­
old boy has recently been diagnosed with
hepatocellular carcinoma following a period of
progressive liver failure. Of significance to the
progression of the infant’s disease was the
measurement of elevated levels of tyrosine and
succinylacetone in the plasma. Given these findings,
which of the following disorders is most likely to be the
root cause of the liver cancer in this infant?
 (A) Isovaleric acidemia
 (B) Maple syrup urine disease
 (C) Phenylketonuria (PKU)
 (D) Propionic acidemia
 (E) Tyrosinemia type 1
Thank U
Thank U
 A 10­
day­
old girl is being examined by her pediatrician
due to concerns raised by her parents about the odd
shape of her eyes. Physical examination shows no
other overt abnormalities. Serum studies show a
methionine concentration of 1175 μM (N <50 μM).
Based upon the findings in this infant, which of the
following enzymes is most likely to be deficient?
 (A) Branched ­
chain keto acid dehydrogenase
 (B) Cystathionine β­
synthase
 (C) Methionine synthase
 (D) Phenylalanine hydroxylase
 (E) Tyrosine aminotransferase
 A 2­
year­
old boy is brought to the physician’s office
for evaluation of severe developmental delay. The
parents say that his urine has always had a strange
musty odor. Physical examination shows the boy
has fair colored hair, pale skin, and pale blue irises.
Which of the following processes is most likely
deficient in this patient?
 (A) Glycine conversion to serine
 (B) Homocysteine conversion to cystathionine
 (C) Phenylalanine conversion to tyrosine
 (D) Tryptophan conversion to serotonin
 (E) Tyrosine conversion to melanin

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