BIOSYNTHESIS OF PYRIMIDINES
INTRODUCTION :
• Pyrimidine is an aromatic heterocyclic organic compound. It has two nitrogen atoms at
position 1 and 3 in the ring.
• In nuclei acids, three types of nucleobases are pyrimidine derivatives –
SOURCE : PRESENTED BY:
PRASHANT VC
DEPT OF ZOOLOGY
GUK
BIOSYNTHESIS :
• The biosynthesis of pyrimidines is a simpler process than purines.
• There are two pathways leading to pyrimidine synthesis:
SALVAGE PATHWAY – the synthesis of nucleotides by recycle the free bases or nucleosides
released from nuclei acid breakdown.
DE NOVO PATHWAY – the synthesis of nucleotides begin with their metabolic precursors :
amino acids, ribose-5-phosphate, carbon dioxide and one-carbon units.
• Pyrimidine synthesis is a de novo synthesis pathway involving six steps reactions.
• The six members pyrimidine ring is made first and then attached to ribose-5-
monophosphate.
• This pathway results in the synthesis of Uridine-5-monophosphate (UMP).
• Out of 6 enzymes involved in this pathway, 5 are present in the cytosol and 1 is present on
the outer surface of inner mitochondrial membrane.
DE NOVO SYNTHESIS OF UMP :
STEP 1 : synthesis of
carbamoyl phosphate
STEP 2 : synthesis of
carbamoyl aspartate
STEP 3 : ring closure and
dihydroorotate formation
STEP 4 : oxidation of
dihydroorotate
STEP 5 : acquisition of the
ribose phosphate moiety
STEP 6 : decarboxylation to
form UMP
SYNTHESIS OF OTHER PYRIMIDINE
NUCLEOTIDES :
The UMP thus formed is converted to UDP
by an ATP-dependent kinas reaction.
UDP serves as a precursor for the synthesis
of dUMP, dTMP, UTP AND CTP.
Ribonucleotide reductase converts UDP to
dUDP, by a thioredoxin-dependent
reaction.
From N^5 ,N^10-methylene
tetrahydrofolate methyl group is
transferred to form deoxythymidine
monophosphate.
UDP produce UTP and then cytidine
triphosphate is synthesized from UTP by
amination.
IMPORTANCE:
• Essential building blocks of nucleic acids
• Biologically very important heterocycles
• Used in anti-biotics , used as anti-bacterical and anti-fungal also
• Derivative of pyrimidine also possess good anti-viral properties
REFERENCE :
• Lehninger_Principles_of_BIOCHEMISTRY 6th edition
• Textbook of biochemistry: U. Satyanarayana U. Chakrapani
• www.ncbi.nlm.nih.gov
• www.boundless.com/textbooks
BIOSYNTHESIS OF PYRIMIDINES.pptx

BIOSYNTHESIS OF PYRIMIDINES.pptx

  • 1.
    BIOSYNTHESIS OF PYRIMIDINES INTRODUCTION: • Pyrimidine is an aromatic heterocyclic organic compound. It has two nitrogen atoms at position 1 and 3 in the ring. • In nuclei acids, three types of nucleobases are pyrimidine derivatives – SOURCE : PRESENTED BY: PRASHANT VC DEPT OF ZOOLOGY GUK
  • 2.
    BIOSYNTHESIS : • Thebiosynthesis of pyrimidines is a simpler process than purines. • There are two pathways leading to pyrimidine synthesis: SALVAGE PATHWAY – the synthesis of nucleotides by recycle the free bases or nucleosides released from nuclei acid breakdown. DE NOVO PATHWAY – the synthesis of nucleotides begin with their metabolic precursors : amino acids, ribose-5-phosphate, carbon dioxide and one-carbon units. • Pyrimidine synthesis is a de novo synthesis pathway involving six steps reactions. • The six members pyrimidine ring is made first and then attached to ribose-5- monophosphate. • This pathway results in the synthesis of Uridine-5-monophosphate (UMP). • Out of 6 enzymes involved in this pathway, 5 are present in the cytosol and 1 is present on the outer surface of inner mitochondrial membrane.
  • 3.
    DE NOVO SYNTHESISOF UMP : STEP 1 : synthesis of carbamoyl phosphate STEP 2 : synthesis of carbamoyl aspartate STEP 3 : ring closure and dihydroorotate formation STEP 4 : oxidation of dihydroorotate STEP 5 : acquisition of the ribose phosphate moiety STEP 6 : decarboxylation to form UMP
  • 4.
    SYNTHESIS OF OTHERPYRIMIDINE NUCLEOTIDES : The UMP thus formed is converted to UDP by an ATP-dependent kinas reaction. UDP serves as a precursor for the synthesis of dUMP, dTMP, UTP AND CTP. Ribonucleotide reductase converts UDP to dUDP, by a thioredoxin-dependent reaction. From N^5 ,N^10-methylene tetrahydrofolate methyl group is transferred to form deoxythymidine monophosphate. UDP produce UTP and then cytidine triphosphate is synthesized from UTP by amination.
  • 5.
    IMPORTANCE: • Essential buildingblocks of nucleic acids • Biologically very important heterocycles • Used in anti-biotics , used as anti-bacterical and anti-fungal also • Derivative of pyrimidine also possess good anti-viral properties REFERENCE : • Lehninger_Principles_of_BIOCHEMISTRY 6th edition • Textbook of biochemistry: U. Satyanarayana U. Chakrapani • www.ncbi.nlm.nih.gov • www.boundless.com/textbooks