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Cellular Network Biology: Large-scale integration of data and text
The document discusses various community resources and software tools for integrating large-scale data and text, including STRING for protein networks, STITCH for chemical networks, COMPARTMENTS for subcellular localization, TISSUES for tissue expression, and DISEASES for disease associations. It provides an overview of text mining techniques used to extract information from literature to build networks in these resources. The presenter demonstrates the Cytoscape App which can import and analyze networks from STRING, perform queries, and analyze subcellular localization, tissue expression, and disease enrichment.
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Cellular Network Biology: Large-scale integration of data and text
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- 85. Thank you STRING &STITCH Damian Szklarczyk Nadezhda Donche va John "Scooter" Morris Helen Cook Michael Kuhn Stefan Wyder Milan Simonovic Alexander Roth Peer Bork Christian von Merin g COMPARTMENTS, TISSUES & DISEASES Alberto Santos Oana Palasca Sune Pletscher- Frankild Christian Stolte Janos Binder Kalliopi Tsafou Jan Gorodkin Sean I. O’Donoghue RAIN Alexander Junge Jan C. Refsgaard Christian Garde Xiaoyong Pan Alberto Santos Ferhat Alkan Christian Anthon Christian von Meri ng Christopher Workman Jan Gorodkin