deep learning applications in medical image analysis brain tumor
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This document discusses the application of machine learning, particularly convolutional neural networks (CNNs), in medical image analysis, highlighting their potential to improve accuracy and efficiency in diagnosing conditions from imaging data. It emphasizes the advantages of using these algorithms over traditional methods, which are constrained by human limitations, and outlines key research areas, applications, and emerging trends in the field. The document also details the technical requirements for implementing these systems and the increased use of imaging modalities in healthcare.
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Deep Learning Applicationsin
Medical Image Analysis
ABSTRACT:
The tremendous success of machine learning algorithms at image recognition tasks in
recent years intersects with a time of dramatically increased use of electronic medical records
and diagnostic imaging. This review introduces the machine learning algorithms as applied to
medical image analysis, focusing on convolutional neural networks, and emphasizing clinical
aspects of the _eld. The advantage of machine learning in an era of medical big data is that
signi_cant hierarchal relationships within the data can be discovered algorithmically without
laborious hand-crafting of features. We cover key research areas and applications of medical
image classi_cation, localization, detection, segmentation, and registration. We conclude by
discussing research obstacles, emerging trends, and possible future directions.
INDEX TERMS Convolutional neural networks, medical image analysis, machine learning,
deep learning.
INTRODUCTION:
Machine learning algorithms have the potential to be invested deeply in all _elds of
medicine, from drug discovery to clinical decision making, signi_cantly altering the way
medicine is practiced. The success of machine learning algorithms at computer vision tasks in
recent years comes at an opportune time when medical records are increasingly digitalized. The
use of electronic health records (EHR) quadrupled from 11.8% to 39.6% amongst of_ce-based
physicians in the US from 2007 to 2012 [1]. Medical images are an integral part of a patient's
EHR and are currently analyzed by human radiologists, who are limited by speed, fatigue, and
experience. It takes years and great _nancial cost to train a quali_ed radiologist, and some health-
care systems outsource radiology reporting to lower-cost countries such as India via tele-
radiology. A delayed or erroneous diagnosis causes harm to the patient. Therefore, it is ideal for
medical image analysis to be carried out by an automated, accurate and ef_cient machine
learning algorithm.](https://image.slidesharecdn.com/11-190926091727/85/deep-learning-applications-in-medical-image-analysis-brain-tumor-1-320.jpg)
![Venkat Java Projects
Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com
Email:venkatjavaprojects@gmail.com
EXISTING SYSTEM:
There is a myriad of imaging modalities, and the frequency of their use is increasing.
Smith-Bindman et al. [2] looked at imaging use from 1996 to 2010 across six large integrated
healthcare systems in the United States, involving 30.9 million imaging examinations. The
authors found that over the study period, CT, MRI and PET usage increased 7.8%, 10% and 57%
respectively.
The symbolic AI paradigm of the 1970s led to the development of rule-based, expert systems.
One early implementation in medicine was the MYCIN system by Shortliffe [3], which
suggested different regimes of antibiotic therapies for patients. Parallel to these developments,
AI algorithms moved from heuristics-based techniques to manual, handcrafted feature extraction
techniques. and then to supervised learning techniques. Unsupervised machine learning methods
are also being researched, but the majority of the algorithms from 2015-2017 in the published
literature have employed supervised learning methods,](https://image.slidesharecdn.com/11-190926091727/85/deep-learning-applications-in-medical-image-analysis-brain-tumor-2-320.jpg)
![Venkat Java Projects
Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com
Email:venkatjavaprojects@gmail.com
PROPOSED SYSTEM:
Currently, CNNs are the most researched machine learning algorithms in medical image
analysis [4]. The reason for this is that CNNs preserve spatial relationships when _ltering input
images. As mentioned, spatial relationships are of crucial importance in radiology, for example,
in how the edge of a bone joins with muscle, or where normal lung tissue interfaces with
cancerous tissue. As shown in Fig. 2., a CNN takes an input image of raw pixels, and transforms
it via Convolutional Layers, Recti_ed Linear Unit (RELU) Layers and Pooling Layers. This
feeds into a _nal Fully Connected Layer which assigns class scores or probabilities, thus
classifying the input into the class with the highest probability.
Detection, sometimes known as Computer-Aided Detection (CADe) is a keen area of
study as missing a lesion on a scan can have drastic consequences for both the patient and the
clinician. The task for the Kaggle Data Science Bowl of 2017 [64] involved the detection of
cancerous lung nodules on CT lung scans. Approximately 2000 CT scans were released for the
competition and the winner Fangzhou [65] achieved a logarithmic loss score of 0.399. Their
solution used a 3-D CNN inspired by U-Net architecture [19] to isolate local patches _rst for
nodule detection. Then this output was fed into a second stage consisting of 2 fully connected
layers for classi_cation of cancer probability. Shin et al. [24] evaluated _ve well-known CNN
architectures in detecting thoracoabdominal lymph nodes and Interstitial lung disease on CT
scans. Detecting lymph nodes is important as they can be a marker of infection or cancer. They
achieved a mediastinal lymph node detection AUC score of 0.95 with a sensitivity of 85% using
GoogLeNet, which was state of the art. They also documented the bene_ts of transfer learning,](https://image.slidesharecdn.com/11-190926091727/85/deep-learning-applications-in-medical-image-analysis-brain-tumor-3-320.jpg)
![Venkat Java Projects
Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com
Email:venkatjavaprojects@gmail.com
and the use of deep learning architectures of up to 22 layers, as opposed to fewer layers which
was the norm in medical image analysis. Overfeat was a CNN pre-trained on natural images that
won the ILSVRC 2013 localization task [66]. Ciompi et al. [67] applied Overfeat to 2-
dimensional slices of CT lung scans oriented in the coronal, axial and sagittal planes, to predict
the presence of nodules within and around lung _ssures. They combined this approach with
simple SVM and RF binary classi_ers, as well as a Bag of Frequencies [68], a novel 3-
dimensional descriptor of their own invention.
SOFTWARE REQUIREMENTS:
OS : Windows
Python IDE : python 2.7.x and above
Pycharm IDE,
Anaconda 3.5
Setup tools and pip to be installed for 3.6.x and above
HARDWARE REQUIREMENTS:
RAM : 4GB and Higher
Processor : Intel i3 and above
Hard Disk : 500GB: Minimum](https://image.slidesharecdn.com/11-190926091727/85/deep-learning-applications-in-medical-image-analysis-brain-tumor-4-320.jpg)
deep learning applications in medical image analysis brain tumor
- 1. Venkat Java Projects Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com Email:[email protected] Deep Learning Applicationsin Medical Image Analysis ABSTRACT: The tremendous success of machine learning algorithms at image recognition tasks in recent years intersects with a time of dramatically increased use of electronic medical records and diagnostic imaging. This review introduces the machine learning algorithms as applied to medical image analysis, focusing on convolutional neural networks, and emphasizing clinical aspects of the _eld. The advantage of machine learning in an era of medical big data is that signi_cant hierarchal relationships within the data can be discovered algorithmically without laborious hand-crafting of features. We cover key research areas and applications of medical image classi_cation, localization, detection, segmentation, and registration. We conclude by discussing research obstacles, emerging trends, and possible future directions. INDEX TERMS Convolutional neural networks, medical image analysis, machine learning, deep learning. INTRODUCTION: Machine learning algorithms have the potential to be invested deeply in all _elds of medicine, from drug discovery to clinical decision making, signi_cantly altering the way medicine is practiced. The success of machine learning algorithms at computer vision tasks in recent years comes at an opportune time when medical records are increasingly digitalized. The use of electronic health records (EHR) quadrupled from 11.8% to 39.6% amongst of_ce-based physicians in the US from 2007 to 2012 [1]. Medical images are an integral part of a patient's EHR and are currently analyzed by human radiologists, who are limited by speed, fatigue, and experience. It takes years and great _nancial cost to train a quali_ed radiologist, and some health- care systems outsource radiology reporting to lower-cost countries such as India via tele- radiology. A delayed or erroneous diagnosis causes harm to the patient. Therefore, it is ideal for medical image analysis to be carried out by an automated, accurate and ef_cient machine learning algorithm.
- 2. Venkat Java Projects Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com Email:[email protected] EXISTING SYSTEM: There is a myriad of imaging modalities, and the frequency of their use is increasing. Smith-Bindman et al. [2] looked at imaging use from 1996 to 2010 across six large integrated healthcare systems in the United States, involving 30.9 million imaging examinations. The authors found that over the study period, CT, MRI and PET usage increased 7.8%, 10% and 57% respectively. The symbolic AI paradigm of the 1970s led to the development of rule-based, expert systems. One early implementation in medicine was the MYCIN system by Shortliffe [3], which suggested different regimes of antibiotic therapies for patients. Parallel to these developments, AI algorithms moved from heuristics-based techniques to manual, handcrafted feature extraction techniques. and then to supervised learning techniques. Unsupervised machine learning methods are also being researched, but the majority of the algorithms from 2015-2017 in the published literature have employed supervised learning methods,
- 3. Venkat Java Projects Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com Email:[email protected] PROPOSED SYSTEM: Currently, CNNs are the most researched machine learning algorithms in medical image analysis [4]. The reason for this is that CNNs preserve spatial relationships when _ltering input images. As mentioned, spatial relationships are of crucial importance in radiology, for example, in how the edge of a bone joins with muscle, or where normal lung tissue interfaces with cancerous tissue. As shown in Fig. 2., a CNN takes an input image of raw pixels, and transforms it via Convolutional Layers, Recti_ed Linear Unit (RELU) Layers and Pooling Layers. This feeds into a _nal Fully Connected Layer which assigns class scores or probabilities, thus classifying the input into the class with the highest probability. Detection, sometimes known as Computer-Aided Detection (CADe) is a keen area of study as missing a lesion on a scan can have drastic consequences for both the patient and the clinician. The task for the Kaggle Data Science Bowl of 2017 [64] involved the detection of cancerous lung nodules on CT lung scans. Approximately 2000 CT scans were released for the competition and the winner Fangzhou [65] achieved a logarithmic loss score of 0.399. Their solution used a 3-D CNN inspired by U-Net architecture [19] to isolate local patches _rst for nodule detection. Then this output was fed into a second stage consisting of 2 fully connected layers for classi_cation of cancer probability. Shin et al. [24] evaluated _ve well-known CNN architectures in detecting thoracoabdominal lymph nodes and Interstitial lung disease on CT scans. Detecting lymph nodes is important as they can be a marker of infection or cancer. They achieved a mediastinal lymph node detection AUC score of 0.95 with a sensitivity of 85% using GoogLeNet, which was state of the art. They also documented the bene_ts of transfer learning,
- 4. Venkat Java Projects Mobile:+91 9966499110 Visit:www.venkatjavaprojects.com Email:[email protected] and the use of deep learning architectures of up to 22 layers, as opposed to fewer layers which was the norm in medical image analysis. Overfeat was a CNN pre-trained on natural images that won the ILSVRC 2013 localization task [66]. Ciompi et al. [67] applied Overfeat to 2- dimensional slices of CT lung scans oriented in the coronal, axial and sagittal planes, to predict the presence of nodules within and around lung _ssures. They combined this approach with simple SVM and RF binary classi_ers, as well as a Bag of Frequencies [68], a novel 3- dimensional descriptor of their own invention. SOFTWARE REQUIREMENTS: OS : Windows Python IDE : python 2.7.x and above Pycharm IDE, Anaconda 3.5 Setup tools and pip to be installed for 3.6.x and above HARDWARE REQUIREMENTS: RAM : 4GB and Higher Processor : Intel i3 and above Hard Disk : 500GB: Minimum