Dr Biplave Karki
Resident
Internal Medicine
Diagnostic modalities in
tuberculosis Pulmonary and
Extrapulmonary
Mycobacterium tuberculosis
 Rod shaped
 Non-spore forming
 Aerobic bacterium
 0.5 ×3 µm
 Neutral on gram
staining
 Acid fast
 Mycolic acid
 Long chain
crosslinked fatty acids
Global Burden
 More than two billion people (about one-third of
the world population) are estimated to be latently
infected with Mycobacterium tuberculosis .
 In 2015, approximately 10.4 million individuals
became ill with tuberculosis (TB), and 1.8 million
died
 Prompt diagnosis of active TB facilitates timely
therapeutic intervention and minimizes
community transmission
Consequence
s of exposure
to
tuberculosis
Extra-pulmonary TB
10-40% of TB
 Lymph nodes 35%
 Pleura 20%
 Genitourinary tract 10-15%
 Bones and joints 10%
 Spine 40%
 Hip 13%
 Knee 10%
 Meninges 5%
 Peritonium 3.5%
 Pericardium
Overview
 Sputum smear microscopy
 Culture
 Phenotypic drug susceptibility tests (DST)
 Molecular techniques
 Automated real time PCR (Xpert MTB/RIF)
 Line probe assays (LPA)
 Radiology
 X-rays
 Ultrasound
 Tuberculin skin test (TST)
 Interferon gamma release assays (IGRAs)
 Biopsies and fine needle aspirate cytology (FNAC)
 Laboratory tests on body fluids
 Other biological examinations
Sputum smear microscopy
 Rapid and reliable identification of patients with
pulmonary tuberculosis (PTB) where there are more
than 5000 bacilli/ml of sputum
 Low sensitivity(40-60%), non-specificity
 At least two sputum specimens
 about 80% of sputum smear-positive patients are found
during the first sputum examination and over 15% more
during the second
 First sample
 at the time of the consultation when the patient is
identified as a suspected TB case
 Second sample
 early morning the day after
Sputum smear microscopy
contd..
 In order to limit the number of visits to the health
facility, “frontloaded microscopy” ('same day' or
'spot-spot' microscopy) can be performed.
 Two sputum specimens are collected one hour
apart. This strategy has shown similar results to
the standard strategy over two days (spot-
morning-spot).
Sputum specimen collection,
storage
 Collect at least 3 ml
 Smears should be performed within three-four days
of collection and in the meanwhile stored
refrigerated (2 to 8°C) and protected from light
 Use Falcon tubes and add 1% CPC to preserve the
specimen for up to 2 weeks. Specimens with CPC
should not be refrigerated
 Sputum induction (3% or 5% hypertonic saline)
 Gastric aspiration (children)
 Bronchoscopy with washings or BAL
Satisfactory sample
 Criteria of good
quality sputum
 Physical
appearance of
sputum sample
should be thick,
purulent and/or
bloodstained
 Sufficient quantity of
at least 3-5 ml
 Contains no food
particles or other
remnants
 Unsatisfactory
sample
 Saliva or upper
aerodigestive tract
secretion
 24 hr sample
 Excessive food
comtamination
 Very bloody
specimen
 Absence of
alveolar
Methods of staining
 Ziehl-Neelsen staining
 Auramine staining
 More rapid slide reading
 It is recommended in laboratories with a high
workload defined as ≥ 20 slides per reader per day
 It requires trained, experienced technicians and a
fluorescent microscope.
Ziehl-Neelsen staining
 Carbol fuchsin
 Steam for 5 min
 Rinse with distilled or
filtered water
 3% acid-alcohol
(ethanol + hydrochloric
acid) 3min 3 times
 Rinse with distilled or
filtered water
 0.3% methylene blue
1min
 Rinse with distilled or
filtered water
 Air dry
Grading AFB scale (WHO-
IUATLD)
Examine at least 300 fields (15 minutes on average)
before giving a negative result.
Grading AFB scale (CDC-ATS)
Auramin O staining
 0.1% auramin O solution
for15min
 Rinse with distilled or
filtered water
 0.5 % acid alcohol for 2
min
 Rinse with distilled or
filtered water
 0.5% potassium
permanganate solution
for 2 min
 Rinse with distilled or
filtered water
 Air dry
Auramin O staining
Read one length of the smear (about 40 fields)
Concentration techniques
 Centrifugation
 Increase the sensitivity of sputum smear
microscopy and fluorescence (up to 20% in some
settings with high HIV prevalence)
Culture
 More sensitive than microscopy (10-100
bacilli/ml)
1. Confirmation of failures
2. Diagnosis of EPTB
3. Confirmation of smear negative TB when the
diagnosis is in doubt
4. Distinction between M. tuberculosis complex
and NTM
5. Monitoring treatment and outcome evaluation
for patients on second-line anti-TB drugs
Culture contd..
 In HIV-infected patients (CD4<100 cells/mm3) ,
cultures of blood and urine should also be
performed in addition to culture of bodily
secretions (sputum, BAL, pleural fluid).
 Once there is growth on either a solid or liquid
media, the organism must be identified.
 Phenotypic
 Genotypic
Culture contd..
 Other methods of species identification
 High pressure liquid chromatography of mycolic
acid
 Low cost, rapid immuno-chromatographic lateral
flow assay (MTP64 Ag)
 Microscopic growth indicator tube
Drug susceptibility tests (DST)
 Phenotypic DST
 determines if a strain is resistant to an anti-TB drug
by evaluating the growth (or metabolic activity) in
the presence of the drug
 Genotypic DST
 Detect drug resistance through identifying genetic
mutations (drug-resistant alleles) in the bacterium
 Also useful for Diagnosis of TB through the
amplification of nucleic acids DNA or RNA (Nucleic
acid amplification test NAAT)
Molecular techniques
1. Automated real time PCR (Xpert MTB/RIF)
2. Line probe assays (LPA)
Automated real time PCR (Xpert
MTB/RIF)
 Based on hemi-nested real time PCR for
simultaneous detection of M. tuberculosis (MTB)
and rifampicin (RIF) resistance (rpoB gene)
 Minimum 1.5 ml sputum
 Highly automated test (only 3 manual steps
required)
 run in a closed system with one cartridge per
sample
 Each instrument can process
 4 samples at one time
 processing time of just under 2 hours
Procedure for Xpert MTB/RIF
Xpert MTB/RIF contd..
 Sensitivities of assay
 98% for smear-positive, culture-positive samples
 72% for smear-negative, culture-positive samples
(sensitivity can reach 90% if the test is repeated 3
times).
 80% sensitivity and > 98% specificity when
performed on cerebrospinal fluid, lymph node
material and gastric fluid.
 Used as an initial diagnostic test (both adults and
children)
 HIV-infected patients
 Suspected Multidrug-resistant TB (MDR-TB) or TB
meningitis
 As the sensitivity of the Xpert test in pleural fluid
Xpert MTB/RIF contd..
 Xpert with RIF positive
 Repeat the test
 Second Xpert MTB/RIF test
 does not show rifampicin resistance
 susceptible TB
 shows rifampicin resistance
 confirmed by a phenotypic DST or a different genotypic DST
method
Xpert MTB/RIF Ultra (Xpert
Ultra)
 Same molecular assay that detects
Mycobacterium tuberculosis and rifampin
resistance with increased sensitivity.
 Uses the same analyzer as Xpert but employs a
new specimen cartridge and software
 WHO has recommended Xpert Ultra as a
replacement for Xpert in all settings (where
available) Sensitivity
Culture positive sputum Culture positive but Smear
negative
Xpert 83 % 46%
Xpert
Ultra
88% 63%
Source: Lancet Infect Dis.
2018;18(1):76.
Line probe assays (LPA)
 Conventional Nucleic Acid Amplification (NAA)
 amplifies M. tuberculosis-specific nucleic acid
sequences with a nucleic acid probe, enabling
direct detection of the bacillus
 lower sensitivity than culture and not recommended
 Two molecular techniques are commercially
available:
1) Hain assays (Germany)
 GenoType® MTBDRplus
 GenoType®MTBDRsl
2) INNO-LiPA Rif. TB® line probe assay (Belgium)
GenoType® MTBDRplus assay
 Good at detecting rifampicin resistance but less
so for isoniazid resistance among smear positive
patients
 Mutation on KatG gene
 resistance to high-dose isoniazid
 Mutation on InhA gene
 resistance to both isoniazid and ethionamide, but
not necessarily to high-dose isoniazid.
Sensitivity Specificity
Rifampicin 95.3% 95.5%
Isoniazid 89.9% 87.1%
GenoType®MTBDRsl assay
 Detects the resistance to
 Fluoroquinolones (gyr A gene) and injectables
drugs (rrs gene) with a good sensitivity but a lower
specificity
 Triage test on smear-positive patients
 to guide the initial treatment in extensively drug-
resistant TB (XDR-TB) suspects
 while awaiting confirmatory results from
conventional phenotypic testing
Other Inexpensive DST
Methods
 Microscopically observed drug suceptibility
(MODS)
 Nitrate reduction assays
 Colorimetric redox indicator assays
Microscopically observed drug
suceptibility (MODS)
 Microcolonies detected
on solid media (7H11
agar)
 Light microscopy
 Identifies
characteristics strings
and tangles of M.tb
 Sensitivity 92%
Summary of bacteriological
examinations
Indications for DST
 Ideally, genotypic DST is indicated for all patients
at the start of TB treatment
 At the very least, the following patients should
have DST performed to isoniazid and rifampicin,
or rifampicin alone:
1. Previously treated patients;
2. Persons who develop active TB after exposure to
a patient with documented MDR-TB
3. Patients who remain smear-positive after two
months of therapy
4. New patients in countries with high prevalence of
MDR-TB
Indications for DST (second-line
drugs)
1. Resistance to at least rifampicin
2. Resistance to at least isoniazid and another
Group 1 drug
3. Culture positive on or after Month 4 of an MDR-
TB treatment
4. Active TB after exposure to a patient with
documented MDR-TB.
Reliability of DST
 1st line drugs
 very reliable for rifampicin and isoniazid
 less reliable for pyrazinamide
 much less for ethambutol
 Injectable and 2nd line drugs
 relatively good reliability and reproducibility for
aminoglycosides, polypeptides and
fluoroquinolones
 much less reliable for other second-line drugs
(para-aminosalicylic acid, ethionamide and
cycloserine
Radiology
 Chest X-ray
 Non-specific investigation for TB
 Not routinely indicated in sputum smear-positive
patients
 Recommended
 smear microscopy results are negative
 suspected TB in children
 Particularly useful where the proportion of
bacteriologically unconfirmed TB is likely to be high
(populations with a high incidence of HIV)
 Pleural and pericardial effusions
 Miliary TB.
Chest X-ray
Less common
manifestations
oPneumothorax
oARDS
ocor pulmonale
olocalised emphysema
Radiology contd..
 Bones and joints (Xray and CT-scan)
 Ultrasound
 pleural and pericardial effusions
 abdominal TB
 multiple enlarged lymph nodes, bowel wall
thickening (ileocaecal region)
Latent TB
 Heaf test
 Montoux test
 IGRAs
Heaf test
 Read at 3–7 days
 Multipuncture method
 Grade 1: 4–6 papules
 Grade 2: Confluent papules forming ring
 Grade 3: Central induration
 Grade 4: >10 mm induration
Tuberculin skin test (TST)-Montoux
test
 5 IU of tuberculin (PPD) injected intradermally on
the ventral surface of the forearm and read after
48 to 72 hours
 The diameter of induration is measured with a
ruler in mm across the forearm
 Positive TST
 ≥ 5 mm
 HIV infected
 Immunocompromised patients
 prednisolone therapy of ≥ 15 mg/day for ≥ 1 month
 Malnourished children
 ≥ 10 mm
 all other adults or children (BCG vaccinated or not).
Tuberculin skin test (TST)
contd..
 Role of TST
 Diagnosis of TB in children
 Identification of candidates for Isoniazid prophylaxis
 Highly positive (> 20 mm) or phlyctenular reaction
can be considered as an argument in favour of
active TB
False positive
TST
 Severe TB (25% of
cases negative)
 Newborn and elderly
 HIV (if CD4 count <
200 cells/mL)
 Malnutrition
 Recent infection (e.g.
measles) or
immunisation
 Immunosuppressive
drugs
 Malignancy
 Sarcoidosis
False negative
TST
 BCG vaccination
 Average diameter
after1 year is 10
mm (4 to 20 mm)
 Expected to
disappear by 5 to
10 years.
 Non-tuberculous
mycobacteria
Interferon gamma release assays
(IGRAs)
 no cross reactivity with prior BCG vaccination and
with most environmental mycobacteria
 less sensitive test in HIV co-infected
 expensive
Principles of
IGRAs
A sample of either purified
T cells or whole blood is
incubated in the presence of
antigens specific to
Mycobacterium tuberculosis
(ESAT-6, CEP-10)
The release of interferon-
gamma (IFN-γ) by the cells
is measured by enzyme-
lined immunosorbent assay
(ELISA)
ESAT (early secretory
T-SPOT.TB®
test
QuantiFERON®
–
TB Gold test
Biopsies and fine needle aspirate
cytology (FNAC)
 Lymph nodes, bone and pleural lining
 Specific granulomatous tissue, the presence
of giant Langhans' cells, and/or caseous
necrosis strongly correlate with TB.
 AFBs are not always present
 Molecular tests can be used on the specimens
obtained from FNAC of lymph nodes
Biopsies and fine needle aspirate
cytology (FNAC) contd..
 Two smears with
Giemsa stain
 Caseous necrosis,
granuloma, giants
cells, and epithelioid
cells or histocytes
 1 or 2 with Ziehl-
Neelsen (ZN) stain
 acid-fast bacilli (AFB)
G ranulomatous inflammation
characterised by large numbers of
macrophages and multinucleate
giant cells (white arrow).
The central area of this focus
shows caseous degeneration
(black arrow).
Biopsies and fine needle aspirate
cytology (FNAC) contd
 Biopsy and culture of bone marrow and liver
tissue
 good diagnostic yield in disseminated (miliary)TB
 particularly in HIV infected patients, who also tend
to have positive blood culture
Fluid Colour Cells Albumin ∆,
Glucose
ADA
(U/L)
AFB
stain
Ascitic
fluid
Translucen
t yellow
> 300/mm3,
lymphocytic
Protein ≥ 30 g/L
SAAG < 1.1 g/dl
Revalta test
positive
>39 Negativ
e
(<2%)
Pleural
fluid
Straw 1,000-2,500/mm3),
predominant
lymphocytes,
L/N ratio >0.75
Protein ≥ 30 g/L
Revalta test
positive
>50 Negativ
e
Pericardia
l fluid
Sero-
sanguinou
s
Lymphocytes/monocyt
es
L/N ratio≥1
High protein >30 Positive
(40-
60%)
CSF Clear,
concentrat
ed
100 -1,000/mm3,
80% Lymphocytes
Proteins>0.40g/L
(Pandy test)
Glucose<60mg/L,
CSF/blood
glucose<0.5
>10 Positive
(<10%)
Laboratory tests on body
fluids
Role of ADA in diagnosis of TB
Fluid ADA value
(U/L)
Sensitivity specificity
Ascitic fluid 39 100% 97%
Pleural fluid 50 92% 90%
Pericardial
fluid
30 94% 68%
CSF 10 79% 91%
Xpert MTB/RIF in body fluids
 Not recommedded in pleural fluid
 Has moderate sensitivity in CSF that can be
increased following centrifugation
 Has modereate sensitivity in urine, specially
recommended in those with CD4 <50
Other biological tests
 LAM assay
 based on detecting lipo-arabino-mannan (LAM)
 a carbohydrate cell wall antigen that is excreted in the urine of
TB patients
 The sensitivity of the LAM urine assay for most populations
are poor
 An exception is the sensitivity of the LAM assay in patients
with CD4 counts < 200.
 Sedimentation rate
 almost always higher but very non-specific
 normal sedimentation rate makes TB less likely but still
possible.
 C-reactive protein
 increased but very non-specific
 Rapid blood tests for “serological diagnosis of TB”
 Not very reliable in diagnosing active TB
 Not recommended by WHO
References
 Davidsons Principles and Practice of Medicine
22ed
 Harrison's Principles of Internal Medicine 19th Ed
 Kumar and Clarks Clinical Medicine 9th ed
 Tuberculosis: Practical guide for clinicians,
nurses, laboratory technicians and medical
auxiliaries. 2014 Edition.
Thank you

Diagnostic modalities in tuberculosis

  • 1.
    Dr Biplave Karki Resident InternalMedicine Diagnostic modalities in tuberculosis Pulmonary and Extrapulmonary
  • 2.
    Mycobacterium tuberculosis  Rodshaped  Non-spore forming  Aerobic bacterium  0.5 ×3 µm  Neutral on gram staining  Acid fast  Mycolic acid  Long chain crosslinked fatty acids
  • 3.
    Global Burden  Morethan two billion people (about one-third of the world population) are estimated to be latently infected with Mycobacterium tuberculosis .  In 2015, approximately 10.4 million individuals became ill with tuberculosis (TB), and 1.8 million died  Prompt diagnosis of active TB facilitates timely therapeutic intervention and minimizes community transmission
  • 4.
  • 5.
    Extra-pulmonary TB 10-40% ofTB  Lymph nodes 35%  Pleura 20%  Genitourinary tract 10-15%  Bones and joints 10%  Spine 40%  Hip 13%  Knee 10%  Meninges 5%  Peritonium 3.5%  Pericardium
  • 6.
    Overview  Sputum smearmicroscopy  Culture  Phenotypic drug susceptibility tests (DST)  Molecular techniques  Automated real time PCR (Xpert MTB/RIF)  Line probe assays (LPA)  Radiology  X-rays  Ultrasound  Tuberculin skin test (TST)  Interferon gamma release assays (IGRAs)  Biopsies and fine needle aspirate cytology (FNAC)  Laboratory tests on body fluids  Other biological examinations
  • 7.
    Sputum smear microscopy Rapid and reliable identification of patients with pulmonary tuberculosis (PTB) where there are more than 5000 bacilli/ml of sputum  Low sensitivity(40-60%), non-specificity  At least two sputum specimens  about 80% of sputum smear-positive patients are found during the first sputum examination and over 15% more during the second  First sample  at the time of the consultation when the patient is identified as a suspected TB case  Second sample  early morning the day after
  • 8.
    Sputum smear microscopy contd.. In order to limit the number of visits to the health facility, “frontloaded microscopy” ('same day' or 'spot-spot' microscopy) can be performed.  Two sputum specimens are collected one hour apart. This strategy has shown similar results to the standard strategy over two days (spot- morning-spot).
  • 9.
    Sputum specimen collection, storage Collect at least 3 ml  Smears should be performed within three-four days of collection and in the meanwhile stored refrigerated (2 to 8°C) and protected from light  Use Falcon tubes and add 1% CPC to preserve the specimen for up to 2 weeks. Specimens with CPC should not be refrigerated  Sputum induction (3% or 5% hypertonic saline)  Gastric aspiration (children)  Bronchoscopy with washings or BAL
  • 10.
    Satisfactory sample  Criteriaof good quality sputum  Physical appearance of sputum sample should be thick, purulent and/or bloodstained  Sufficient quantity of at least 3-5 ml  Contains no food particles or other remnants  Unsatisfactory sample  Saliva or upper aerodigestive tract secretion  24 hr sample  Excessive food comtamination  Very bloody specimen  Absence of alveolar
  • 11.
    Methods of staining Ziehl-Neelsen staining  Auramine staining  More rapid slide reading  It is recommended in laboratories with a high workload defined as ≥ 20 slides per reader per day  It requires trained, experienced technicians and a fluorescent microscope.
  • 12.
    Ziehl-Neelsen staining  Carbolfuchsin  Steam for 5 min  Rinse with distilled or filtered water  3% acid-alcohol (ethanol + hydrochloric acid) 3min 3 times  Rinse with distilled or filtered water  0.3% methylene blue 1min  Rinse with distilled or filtered water  Air dry
  • 13.
    Grading AFB scale(WHO- IUATLD) Examine at least 300 fields (15 minutes on average) before giving a negative result.
  • 14.
  • 15.
    Auramin O staining 0.1% auramin O solution for15min  Rinse with distilled or filtered water  0.5 % acid alcohol for 2 min  Rinse with distilled or filtered water  0.5% potassium permanganate solution for 2 min  Rinse with distilled or filtered water  Air dry
  • 16.
    Auramin O staining Readone length of the smear (about 40 fields)
  • 17.
    Concentration techniques  Centrifugation Increase the sensitivity of sputum smear microscopy and fluorescence (up to 20% in some settings with high HIV prevalence)
  • 18.
    Culture  More sensitivethan microscopy (10-100 bacilli/ml) 1. Confirmation of failures 2. Diagnosis of EPTB 3. Confirmation of smear negative TB when the diagnosis is in doubt 4. Distinction between M. tuberculosis complex and NTM 5. Monitoring treatment and outcome evaluation for patients on second-line anti-TB drugs
  • 19.
    Culture contd..  InHIV-infected patients (CD4<100 cells/mm3) , cultures of blood and urine should also be performed in addition to culture of bodily secretions (sputum, BAL, pleural fluid).  Once there is growth on either a solid or liquid media, the organism must be identified.  Phenotypic  Genotypic
  • 20.
    Culture contd..  Othermethods of species identification  High pressure liquid chromatography of mycolic acid  Low cost, rapid immuno-chromatographic lateral flow assay (MTP64 Ag)  Microscopic growth indicator tube
  • 21.
    Drug susceptibility tests(DST)  Phenotypic DST  determines if a strain is resistant to an anti-TB drug by evaluating the growth (or metabolic activity) in the presence of the drug  Genotypic DST  Detect drug resistance through identifying genetic mutations (drug-resistant alleles) in the bacterium  Also useful for Diagnosis of TB through the amplification of nucleic acids DNA or RNA (Nucleic acid amplification test NAAT)
  • 22.
    Molecular techniques 1. Automatedreal time PCR (Xpert MTB/RIF) 2. Line probe assays (LPA)
  • 23.
    Automated real timePCR (Xpert MTB/RIF)  Based on hemi-nested real time PCR for simultaneous detection of M. tuberculosis (MTB) and rifampicin (RIF) resistance (rpoB gene)  Minimum 1.5 ml sputum  Highly automated test (only 3 manual steps required)  run in a closed system with one cartridge per sample  Each instrument can process  4 samples at one time  processing time of just under 2 hours
  • 24.
  • 25.
    Xpert MTB/RIF contd.. Sensitivities of assay  98% for smear-positive, culture-positive samples  72% for smear-negative, culture-positive samples (sensitivity can reach 90% if the test is repeated 3 times).  80% sensitivity and > 98% specificity when performed on cerebrospinal fluid, lymph node material and gastric fluid.  Used as an initial diagnostic test (both adults and children)  HIV-infected patients  Suspected Multidrug-resistant TB (MDR-TB) or TB meningitis  As the sensitivity of the Xpert test in pleural fluid
  • 26.
    Xpert MTB/RIF contd.. Xpert with RIF positive  Repeat the test  Second Xpert MTB/RIF test  does not show rifampicin resistance  susceptible TB  shows rifampicin resistance  confirmed by a phenotypic DST or a different genotypic DST method
  • 27.
    Xpert MTB/RIF Ultra(Xpert Ultra)  Same molecular assay that detects Mycobacterium tuberculosis and rifampin resistance with increased sensitivity.  Uses the same analyzer as Xpert but employs a new specimen cartridge and software  WHO has recommended Xpert Ultra as a replacement for Xpert in all settings (where available) Sensitivity Culture positive sputum Culture positive but Smear negative Xpert 83 % 46% Xpert Ultra 88% 63% Source: Lancet Infect Dis. 2018;18(1):76.
  • 28.
    Line probe assays(LPA)  Conventional Nucleic Acid Amplification (NAA)  amplifies M. tuberculosis-specific nucleic acid sequences with a nucleic acid probe, enabling direct detection of the bacillus  lower sensitivity than culture and not recommended  Two molecular techniques are commercially available: 1) Hain assays (Germany)  GenoType® MTBDRplus  GenoType®MTBDRsl 2) INNO-LiPA Rif. TB® line probe assay (Belgium)
  • 29.
    GenoType® MTBDRplus assay Good at detecting rifampicin resistance but less so for isoniazid resistance among smear positive patients  Mutation on KatG gene  resistance to high-dose isoniazid  Mutation on InhA gene  resistance to both isoniazid and ethionamide, but not necessarily to high-dose isoniazid. Sensitivity Specificity Rifampicin 95.3% 95.5% Isoniazid 89.9% 87.1%
  • 30.
    GenoType®MTBDRsl assay  Detectsthe resistance to  Fluoroquinolones (gyr A gene) and injectables drugs (rrs gene) with a good sensitivity but a lower specificity  Triage test on smear-positive patients  to guide the initial treatment in extensively drug- resistant TB (XDR-TB) suspects  while awaiting confirmatory results from conventional phenotypic testing
  • 31.
    Other Inexpensive DST Methods Microscopically observed drug suceptibility (MODS)  Nitrate reduction assays  Colorimetric redox indicator assays
  • 32.
    Microscopically observed drug suceptibility(MODS)  Microcolonies detected on solid media (7H11 agar)  Light microscopy  Identifies characteristics strings and tangles of M.tb  Sensitivity 92%
  • 33.
  • 34.
    Indications for DST Ideally, genotypic DST is indicated for all patients at the start of TB treatment  At the very least, the following patients should have DST performed to isoniazid and rifampicin, or rifampicin alone: 1. Previously treated patients; 2. Persons who develop active TB after exposure to a patient with documented MDR-TB 3. Patients who remain smear-positive after two months of therapy 4. New patients in countries with high prevalence of MDR-TB
  • 35.
    Indications for DST(second-line drugs) 1. Resistance to at least rifampicin 2. Resistance to at least isoniazid and another Group 1 drug 3. Culture positive on or after Month 4 of an MDR- TB treatment 4. Active TB after exposure to a patient with documented MDR-TB.
  • 36.
    Reliability of DST 1st line drugs  very reliable for rifampicin and isoniazid  less reliable for pyrazinamide  much less for ethambutol  Injectable and 2nd line drugs  relatively good reliability and reproducibility for aminoglycosides, polypeptides and fluoroquinolones  much less reliable for other second-line drugs (para-aminosalicylic acid, ethionamide and cycloserine
  • 37.
    Radiology  Chest X-ray Non-specific investigation for TB  Not routinely indicated in sputum smear-positive patients  Recommended  smear microscopy results are negative  suspected TB in children  Particularly useful where the proportion of bacteriologically unconfirmed TB is likely to be high (populations with a high incidence of HIV)  Pleural and pericardial effusions  Miliary TB.
  • 38.
  • 39.
    Radiology contd..  Bonesand joints (Xray and CT-scan)  Ultrasound  pleural and pericardial effusions  abdominal TB  multiple enlarged lymph nodes, bowel wall thickening (ileocaecal region)
  • 40.
    Latent TB  Heaftest  Montoux test  IGRAs
  • 41.
    Heaf test  Readat 3–7 days  Multipuncture method  Grade 1: 4–6 papules  Grade 2: Confluent papules forming ring  Grade 3: Central induration  Grade 4: >10 mm induration
  • 42.
    Tuberculin skin test(TST)-Montoux test  5 IU of tuberculin (PPD) injected intradermally on the ventral surface of the forearm and read after 48 to 72 hours  The diameter of induration is measured with a ruler in mm across the forearm  Positive TST  ≥ 5 mm  HIV infected  Immunocompromised patients  prednisolone therapy of ≥ 15 mg/day for ≥ 1 month  Malnourished children  ≥ 10 mm  all other adults or children (BCG vaccinated or not).
  • 43.
    Tuberculin skin test(TST) contd..  Role of TST  Diagnosis of TB in children  Identification of candidates for Isoniazid prophylaxis  Highly positive (> 20 mm) or phlyctenular reaction can be considered as an argument in favour of active TB
  • 44.
    False positive TST  SevereTB (25% of cases negative)  Newborn and elderly  HIV (if CD4 count < 200 cells/mL)  Malnutrition  Recent infection (e.g. measles) or immunisation  Immunosuppressive drugs  Malignancy  Sarcoidosis False negative TST  BCG vaccination  Average diameter after1 year is 10 mm (4 to 20 mm)  Expected to disappear by 5 to 10 years.  Non-tuberculous mycobacteria
  • 45.
    Interferon gamma releaseassays (IGRAs)  no cross reactivity with prior BCG vaccination and with most environmental mycobacteria  less sensitive test in HIV co-infected  expensive
  • 46.
    Principles of IGRAs A sampleof either purified T cells or whole blood is incubated in the presence of antigens specific to Mycobacterium tuberculosis (ESAT-6, CEP-10) The release of interferon- gamma (IFN-γ) by the cells is measured by enzyme- lined immunosorbent assay (ELISA) ESAT (early secretory T-SPOT.TB® test QuantiFERON® – TB Gold test
  • 47.
    Biopsies and fineneedle aspirate cytology (FNAC)  Lymph nodes, bone and pleural lining  Specific granulomatous tissue, the presence of giant Langhans' cells, and/or caseous necrosis strongly correlate with TB.  AFBs are not always present  Molecular tests can be used on the specimens obtained from FNAC of lymph nodes
  • 48.
    Biopsies and fineneedle aspirate cytology (FNAC) contd..  Two smears with Giemsa stain  Caseous necrosis, granuloma, giants cells, and epithelioid cells or histocytes  1 or 2 with Ziehl- Neelsen (ZN) stain  acid-fast bacilli (AFB) G ranulomatous inflammation characterised by large numbers of macrophages and multinucleate giant cells (white arrow). The central area of this focus shows caseous degeneration (black arrow).
  • 49.
    Biopsies and fineneedle aspirate cytology (FNAC) contd  Biopsy and culture of bone marrow and liver tissue  good diagnostic yield in disseminated (miliary)TB  particularly in HIV infected patients, who also tend to have positive blood culture
  • 50.
    Fluid Colour CellsAlbumin ∆, Glucose ADA (U/L) AFB stain Ascitic fluid Translucen t yellow > 300/mm3, lymphocytic Protein ≥ 30 g/L SAAG < 1.1 g/dl Revalta test positive >39 Negativ e (<2%) Pleural fluid Straw 1,000-2,500/mm3), predominant lymphocytes, L/N ratio >0.75 Protein ≥ 30 g/L Revalta test positive >50 Negativ e Pericardia l fluid Sero- sanguinou s Lymphocytes/monocyt es L/N ratio≥1 High protein >30 Positive (40- 60%) CSF Clear, concentrat ed 100 -1,000/mm3, 80% Lymphocytes Proteins>0.40g/L (Pandy test) Glucose<60mg/L, CSF/blood glucose<0.5 >10 Positive (<10%) Laboratory tests on body fluids
  • 51.
    Role of ADAin diagnosis of TB Fluid ADA value (U/L) Sensitivity specificity Ascitic fluid 39 100% 97% Pleural fluid 50 92% 90% Pericardial fluid 30 94% 68% CSF 10 79% 91%
  • 52.
    Xpert MTB/RIF inbody fluids  Not recommedded in pleural fluid  Has moderate sensitivity in CSF that can be increased following centrifugation  Has modereate sensitivity in urine, specially recommended in those with CD4 <50
  • 53.
    Other biological tests LAM assay  based on detecting lipo-arabino-mannan (LAM)  a carbohydrate cell wall antigen that is excreted in the urine of TB patients  The sensitivity of the LAM urine assay for most populations are poor  An exception is the sensitivity of the LAM assay in patients with CD4 counts < 200.  Sedimentation rate  almost always higher but very non-specific  normal sedimentation rate makes TB less likely but still possible.  C-reactive protein  increased but very non-specific  Rapid blood tests for “serological diagnosis of TB”  Not very reliable in diagnosing active TB  Not recommended by WHO
  • 54.
    References  Davidsons Principlesand Practice of Medicine 22ed  Harrison's Principles of Internal Medicine 19th Ed  Kumar and Clarks Clinical Medicine 9th ed  Tuberculosis: Practical guide for clinicians, nurses, laboratory technicians and medical auxiliaries. 2014 Edition.
  • 55.

Editor's Notes

  • #8 Non-specificity, such that M. tuberculosis appears the same as non tuberculous mycobacteria (NTM)
  • #10 CPC cethylpyrodinium chloride, not compatible with MGIT
  • #11 A sputum Gram's stain specimen is considered satisfactory for interpretation when Neutrophil count >25 and epithelial cells <10 per low-power field.
  • #12 Light microscope for ZN staining Fluorescence microscope with mercury vapor light sources/light emitting diode (LED) for Auramine staining.
  • #14 Word Health Organization and the International Union against Tuberculosis and Lung Disease (WHO-IUATLD)
  • #15 US Centre of Disease Control and American Thoracic Society (CDC-ATS)
  • #16 Potassium permaganate or Acridine Orange
  • #19 Egg based (Lowenstein-Jensen), Agar based (Middlebrook 7H10 or 7H11), Liquid (Middlebrook 7H12, MGIT 960) Rapid culture techniques Mycobacteria Growth Indicator Tube (MGIT) Microscopic Observation Drug Susceptibility (MODS) assay. Sputum culture has sensitivity 80% and specificity 98%.
  • #20 Conventional method of species identification (growth time, colony pigmentation and morphology, and varieties of biochemical tests).
  • #21 MGIT The fluorescent compound is sensitive to the presence of oxygen dissolved in the broth. Initially, the large amount of dissolved oxygen quenches emissions from the compound and little fluorescence can be detected. Later, actively respiring microorganisms consume the oxygen and allow the fluorescence to be detected.
  • #24 Types of PCR Long PCR: Used to amplify DNA over the entire length up to 25kb of genomic DNA segments cloned. Nested PCR: Involves two consecutive PCR reactions of 25 cycles. The first PCR uses primers external to the sequence of interest. The second PCR uses the product of the first PCR in conjunction with one or more nested primers (as they lie/are nested within the first fragment) to amplify the sequence within the region flanked by the initial set of primers. Inverse PCR: Used to amplify DNA of unknown sequence that is adjacent to known DNA sequence. Quantitative PCR: Product amplification w r t time, which is compared with a standard DNA. Hot start PCR: Used to optimize the yield of the desired amplified product in PCR and simultaneously to suppress nonspecific amplification. Multiplex PCR: is a variant of PCR which enabling simultaneous amplification of many targets of interest in one reaction by using more than one pair of primer Reverse Transcriptase PCR(RT-PCR): Based on the process of reverse transcription, which reverse transcribes RNA into DNA and was initially isolated from retroviruses Real-time PCR: monitors the fluorescence emitted during the reaction as an indicator of amplicon production at each PCR cycle (in real time) as opposed to the endpoint detection Application of PCR DNA fingerprinting Drug discovery Genetic matching Genetic engineering Pre-natal diagnosis Classification of organisms Genotyping Molecular archaeology Mutagenesis Mutation detection Sequencing Cancer research
  • #28 Xpert MTB/RIF Ultra (Xpert Ultra) approved in december 2017 The Xpert Ultra is available in the United States for research use only.
  • #34 TLA (thin layer agar) MODS (microscopically observed drug susceptibility)
  • #39 CXR in TB Infiltrates, nodules with or without cavitation in the upper lobes and in the superior segments of the lower lobes Pleural effusions Adenopathy in the mediastinum or hila (rare in TB in adults and adolescents) Miliary disease
  • #42 Montoux induration 5–14 mm (equivalent to Heaf grade 2) and > 15 mm (Heaf grade 3–4)
  • #46 IGRA is preferred in age more than 5 years but TST is preferred in age less than 5 years due to the lack of studies of IGRA in age less than 5 years.
  • #47 QuantiFERON®–TB Gold In-Tube assay (also contains another specific Ag, TB 7.7)
  • #49 The golden standard of diagnosis for TB on tissue samples is hematoxylin-eosin stain, but Giemsa stain can be used as an alternative in remote areas with limited equipment.
  • #51 Pandy test Add 3 drops of CSF to 1 ml of Pandy reagent (saturated phenol solution) in centrifuge tube and look for white cloud The normal range of protein in CSF is 0.20-0.45 g/litre. The Pandy test is positive when protein is superior to 0.45 g/litre. Rivalta test Add 3 drops of pleural fluid/ascites to 2 ml of Revalta reagent (glacial acetic acid) in centrifuge tube and look for white cloud The test is positive when the proteins are superior to 30 g/litre The sensitivity of AFB smear and mycobacterial culture ascites fluid is low (less than 2 percent and less than 20 percent, respectively) The yield of mycobacterial culture may be increased (up to 83 percent) if 1 L of ascitic fluid (concentrated by centrifugation) is cultured SAAG is >1.1 in TB with cirrhosis The sensitivity of ascites fluid ADA in patients with cirrhosis is lower(30%), likely due to poor humoral and T cell–mediated response, in such cases, it may be a helpful supportive diagnostic tool if lower thresholds are used (21 to 30 international units/L) HIV-infected patients and patients already on TB medications may have lower levels of ADA ADA is generally not a good test in cerebrospinal fluid
  • #55 a. When the patient’s serological status is unknown, this algorithm should be used in settings with HIV prevalence < 5%. b. Patients are considered to be at low risk of multidrug-resistant TB (MDR-TB) if they do not meet one of the following criteria: resident in areas with high MDR-TB prevalence; all retreatment categories; exposure to a known MDR-TB case; patient remaining smear + at 2 months; exposure to institutions with high risk of MDR-TB (e.g. prisons). c. Danger signs: respiratory rate > 30/min and/or fever > 39°C and/or pulse rate > 120/min and/or unable to walk. d. Smear microscopy: two sputum examinations performed on the same day. e. Broad spectrum ATB: • If no danger signs: amoxicillin for 7 days (NO fluoroquinolones); • If danger signs: parenteral ATB (e.g. ceftriaxone). f. Clinical response to a broad spectrum antibiotic does not rule out TB. Patient should be informed to return for reassessment if symptoms recur. g. According to setting: • Xpert MTB/RIF available: two sputum smear microscopy on the same day and one Xpert MTB/RIF from one of the samples collected for smear microscopy; • Xpert MTB/RIF not available: two sputum smear microscopy on the same day. h. In groups of patients with high level of resistance to isoniazid (> 10%) it is recommended to perform a conventional DST at baseline (and/or a line probe assay) in order to provide adequate treatment.
  • #56 i. According to setting: • Prevalence of MDR-TB < 10%, patients seriously ill should immediately be initiated under empiric MDR-TB treatment. H and R will be included in the regimen until confirmation of MDR-TB by conventional methods. If the patient is stable, the clinician may choose to wait for confirmation before initiating a MDR treatment. • Prevalence of MDR-TB ≥ 10%, patients should be initiated under empiric MDR-TB treatment. Consider adding H in settings where mono-resistance to R is not uncommon. j. Clinical signs and chest X-ray (CXR) findings tend to be more typical in those who are HIV-negative having active TB
  • #57 a. When the patient’s serological status is unknown, this algorithm should be used in settings with HIV prevalence > 5%. b. TB suspect is defined as: cough for more than 2 weeks or any cough with at least one of the following signs: loss of weight, night sweats, fever, and suspicion based on clinical judgment. c. Danger signs: respiratory rate > 30/min and/or fever > 39°C and/or pulse rate > 120/min and/or unable to walk. d. According to setting: • Xpert MTB/RIF available: two sputum smear microscopy on the same day AND one Xpert MTB/RIF from one of the samples collected for smear microscopy; • Xpert MTB/RIF not available: two sputum smear microscopy on the same day. e. In patients groups with high level of resistance to isoniazid (> 10%) it is recommended to perform a conventional DST at baseline (and/or a line probe assay) in order to provide adequate treatment. f. When possible a culture should be performed. A positive culture result at any point in time in the algorithm should lead to a full TB treatment. g. TB treatment should be started when clinical signs AND chest X-ray (CXR) are suggestive of TB. h. Broad spectrum ATB/PCP: • If no danger signs: amoxicillin for 7 days (or recommended oral agent for community-acquired pneumonia in the area). Do NOT use fluoroquinolones; • If danger signs: parenteral ATB (e.g. ceftriaxone) AND high dose cotrimoxazole. i. If no danger signs: patient should be re-assessed after 7 days. If danger signs: patient should be assessed daily and if no response, TB treatment should be considered after 3 to 5 days. Clinical response to broad-spectrum ATB does not rule out TB. Patient should be informed to return for reassessment if symptoms recur. j. Differential diagnosis of a coughing HIV-infected adult/adolescent: bacterial (including atypical) pneumonia, PCP, fungal infection, non-tuberculous mycobacteria, nocardiosis, Kaposi sarcoma and lymphoma. k. The diagnosis should be based on clinical assessment, CXR and CD4 results, whether cotrimoxazole preventive therapy (CPT) was used, and other treatment already used in the patient. If the index of suspicion for active TB is high, empiric TB treatment should be initiated without waiting for diagnosis confirmation. Other treatments such as broad-spectrum ATB or therapy for PCP may be needed in addition to TB treatment.
  • #58 l. In the absence of any improvement of clinical signs (no weight gain, persistent cough, pain, etc.) AND no improvement on CXR after 2 months of a well conducted TB treatment, diagnosis and treatment should be reconsidered. MDR-TB should also be considered. m. In addition to the differential diagnosis in Note k above, DR-TB should be considered. n. Immediately start empiric MDR treatment, even if positive predictive value of Xpert MTB/RIF for R resistance is low (this is done to avoid the rapid and high mortality due to untreated MDR-TB in HIV patients). H and R should be included in the regimen until confirmation of MDR-TB by conventional methods if the patient comes from a group with less than a prevalence of MDR-TB < 10%. In groups of patients with prevalence of MDR-TB ≥ 10%, patients should be initiated under an empiric MDR treatment without H or R, although one can consider adding H in settings where mono-resistance to R is not uncommon.
  • #59 a.The following patients are considered to be at high risk of MDR-TB: resident in areas with high MDR-TB prevalence; all retreatment categories; exposure to a known MDR-TB case; patient remaining smear-positive at 2 months; exposure to institutions with high risk of MDR-TB (e.g. prisons). b.Groups of patients at risk of MDR-TB are also at risk of other types of DR-TB as well. DST to the first-line should be performed in order to provide adequate treatment for possible mono- or poly-drug resistance. c.In populations with a prevalence < 10% of MDR-TB, the resistance to R diagnosed by Xpert MTB/RIF must be confirmed by conventional methods. Drug sensitivity testing (DST) to both first-line drugs and second line TB drugs should be performed if possible. d.In groups of patients with prevalence of MDR-TB < 10%, the decision to start the MDR-TB treatment will be made on clinical presentation of the patient and immunological status. Patients seriously ill and/or HIV+ should be initiated immediately under empiric MDR-TB treatment. H and R will be included in the regimen until confirmation by conventional methods. In groups of patients with prevalence of MDR-TB ≥ 10%, the patient should be initiated using an empiric MDR-TB treatment. Consider adding H in settings where mono-resistance to R is not uncommon. e. Baseline sputum smear microscopy result on 1 specimen in order to: 1) allow patient follow-up with microscopy; 2) take immediate decisions related to TB infection control.