This document discusses diagnostic modalities for tuberculosis, including both pulmonary and extrapulmonary TB. It provides details on various bacteriological examinations for diagnosing TB, such as sputum smear microscopy, culture, drug susceptibility tests, and molecular techniques like Xpert MTB/RIF and line probe assays. Radiological examinations like chest X-rays are also discussed. The global burden of TB is summarized, with over 10 million new cases and 1.8 million deaths annually. Prompt diagnosis is important for treatment and minimizing transmission.
Global Burden
Morethan two billion people (about one-third of
the world population) are estimated to be latently
infected with Mycobacterium tuberculosis .
In 2015, approximately 10.4 million individuals
became ill with tuberculosis (TB), and 1.8 million
died
Prompt diagnosis of active TB facilitates timely
therapeutic intervention and minimizes
community transmission
Overview
Sputum smearmicroscopy
Culture
Phenotypic drug susceptibility tests (DST)
Molecular techniques
Automated real time PCR (Xpert MTB/RIF)
Line probe assays (LPA)
Radiology
X-rays
Ultrasound
Tuberculin skin test (TST)
Interferon gamma release assays (IGRAs)
Biopsies and fine needle aspirate cytology (FNAC)
Laboratory tests on body fluids
Other biological examinations
7.
Sputum smear microscopy
Rapid and reliable identification of patients with
pulmonary tuberculosis (PTB) where there are more
than 5000 bacilli/ml of sputum
Low sensitivity(40-60%), non-specificity
At least two sputum specimens
about 80% of sputum smear-positive patients are found
during the first sputum examination and over 15% more
during the second
First sample
at the time of the consultation when the patient is
identified as a suspected TB case
Second sample
early morning the day after
8.
Sputum smear microscopy
contd..
In order to limit the number of visits to the health
facility, “frontloaded microscopy” ('same day' or
'spot-spot' microscopy) can be performed.
Two sputum specimens are collected one hour
apart. This strategy has shown similar results to
the standard strategy over two days (spot-
morning-spot).
9.
Sputum specimen collection,
storage
Collect at least 3 ml
Smears should be performed within three-four days
of collection and in the meanwhile stored
refrigerated (2 to 8°C) and protected from light
Use Falcon tubes and add 1% CPC to preserve the
specimen for up to 2 weeks. Specimens with CPC
should not be refrigerated
Sputum induction (3% or 5% hypertonic saline)
Gastric aspiration (children)
Bronchoscopy with washings or BAL
10.
Satisfactory sample
Criteriaof good
quality sputum
Physical
appearance of
sputum sample
should be thick,
purulent and/or
bloodstained
Sufficient quantity of
at least 3-5 ml
Contains no food
particles or other
remnants
Unsatisfactory
sample
Saliva or upper
aerodigestive tract
secretion
24 hr sample
Excessive food
comtamination
Very bloody
specimen
Absence of
alveolar
11.
Methods of staining
Ziehl-Neelsen staining
Auramine staining
More rapid slide reading
It is recommended in laboratories with a high
workload defined as ≥ 20 slides per reader per day
It requires trained, experienced technicians and a
fluorescent microscope.
12.
Ziehl-Neelsen staining
Carbolfuchsin
Steam for 5 min
Rinse with distilled or
filtered water
3% acid-alcohol
(ethanol + hydrochloric
acid) 3min 3 times
Rinse with distilled or
filtered water
0.3% methylene blue
1min
Rinse with distilled or
filtered water
Air dry
13.
Grading AFB scale(WHO-
IUATLD)
Examine at least 300 fields (15 minutes on average)
before giving a negative result.
Auramin O staining
0.1% auramin O solution
for15min
Rinse with distilled or
filtered water
0.5 % acid alcohol for 2
min
Rinse with distilled or
filtered water
0.5% potassium
permanganate solution
for 2 min
Rinse with distilled or
filtered water
Air dry
Culture
More sensitivethan microscopy (10-100
bacilli/ml)
1. Confirmation of failures
2. Diagnosis of EPTB
3. Confirmation of smear negative TB when the
diagnosis is in doubt
4. Distinction between M. tuberculosis complex
and NTM
5. Monitoring treatment and outcome evaluation
for patients on second-line anti-TB drugs
19.
Culture contd..
InHIV-infected patients (CD4<100 cells/mm3) ,
cultures of blood and urine should also be
performed in addition to culture of bodily
secretions (sputum, BAL, pleural fluid).
Once there is growth on either a solid or liquid
media, the organism must be identified.
Phenotypic
Genotypic
20.
Culture contd..
Othermethods of species identification
High pressure liquid chromatography of mycolic
acid
Low cost, rapid immuno-chromatographic lateral
flow assay (MTP64 Ag)
Microscopic growth indicator tube
21.
Drug susceptibility tests(DST)
Phenotypic DST
determines if a strain is resistant to an anti-TB drug
by evaluating the growth (or metabolic activity) in
the presence of the drug
Genotypic DST
Detect drug resistance through identifying genetic
mutations (drug-resistant alleles) in the bacterium
Also useful for Diagnosis of TB through the
amplification of nucleic acids DNA or RNA (Nucleic
acid amplification test NAAT)
Automated real timePCR (Xpert
MTB/RIF)
Based on hemi-nested real time PCR for
simultaneous detection of M. tuberculosis (MTB)
and rifampicin (RIF) resistance (rpoB gene)
Minimum 1.5 ml sputum
Highly automated test (only 3 manual steps
required)
run in a closed system with one cartridge per
sample
Each instrument can process
4 samples at one time
processing time of just under 2 hours
Xpert MTB/RIF contd..
Sensitivities of assay
98% for smear-positive, culture-positive samples
72% for smear-negative, culture-positive samples
(sensitivity can reach 90% if the test is repeated 3
times).
80% sensitivity and > 98% specificity when
performed on cerebrospinal fluid, lymph node
material and gastric fluid.
Used as an initial diagnostic test (both adults and
children)
HIV-infected patients
Suspected Multidrug-resistant TB (MDR-TB) or TB
meningitis
As the sensitivity of the Xpert test in pleural fluid
26.
Xpert MTB/RIF contd..
Xpert with RIF positive
Repeat the test
Second Xpert MTB/RIF test
does not show rifampicin resistance
susceptible TB
shows rifampicin resistance
confirmed by a phenotypic DST or a different genotypic DST
method
27.
Xpert MTB/RIF Ultra(Xpert
Ultra)
Same molecular assay that detects
Mycobacterium tuberculosis and rifampin
resistance with increased sensitivity.
Uses the same analyzer as Xpert but employs a
new specimen cartridge and software
WHO has recommended Xpert Ultra as a
replacement for Xpert in all settings (where
available) Sensitivity
Culture positive sputum Culture positive but Smear
negative
Xpert 83 % 46%
Xpert
Ultra
88% 63%
Source: Lancet Infect Dis.
2018;18(1):76.
28.
Line probe assays(LPA)
Conventional Nucleic Acid Amplification (NAA)
amplifies M. tuberculosis-specific nucleic acid
sequences with a nucleic acid probe, enabling
direct detection of the bacillus
lower sensitivity than culture and not recommended
Two molecular techniques are commercially
available:
1) Hain assays (Germany)
GenoType® MTBDRplus
GenoType®MTBDRsl
2) INNO-LiPA Rif. TB® line probe assay (Belgium)
29.
GenoType® MTBDRplus assay
Good at detecting rifampicin resistance but less
so for isoniazid resistance among smear positive
patients
Mutation on KatG gene
resistance to high-dose isoniazid
Mutation on InhA gene
resistance to both isoniazid and ethionamide, but
not necessarily to high-dose isoniazid.
Sensitivity Specificity
Rifampicin 95.3% 95.5%
Isoniazid 89.9% 87.1%
30.
GenoType®MTBDRsl assay
Detectsthe resistance to
Fluoroquinolones (gyr A gene) and injectables
drugs (rrs gene) with a good sensitivity but a lower
specificity
Triage test on smear-positive patients
to guide the initial treatment in extensively drug-
resistant TB (XDR-TB) suspects
while awaiting confirmatory results from
conventional phenotypic testing
31.
Other Inexpensive DST
Methods
Microscopically observed drug suceptibility
(MODS)
Nitrate reduction assays
Colorimetric redox indicator assays
32.
Microscopically observed drug
suceptibility(MODS)
Microcolonies detected
on solid media (7H11
agar)
Light microscopy
Identifies
characteristics strings
and tangles of M.tb
Sensitivity 92%
Indications for DST
Ideally, genotypic DST is indicated for all patients
at the start of TB treatment
At the very least, the following patients should
have DST performed to isoniazid and rifampicin,
or rifampicin alone:
1. Previously treated patients;
2. Persons who develop active TB after exposure to
a patient with documented MDR-TB
3. Patients who remain smear-positive after two
months of therapy
4. New patients in countries with high prevalence of
MDR-TB
35.
Indications for DST(second-line
drugs)
1. Resistance to at least rifampicin
2. Resistance to at least isoniazid and another
Group 1 drug
3. Culture positive on or after Month 4 of an MDR-
TB treatment
4. Active TB after exposure to a patient with
documented MDR-TB.
36.
Reliability of DST
1st line drugs
very reliable for rifampicin and isoniazid
less reliable for pyrazinamide
much less for ethambutol
Injectable and 2nd line drugs
relatively good reliability and reproducibility for
aminoglycosides, polypeptides and
fluoroquinolones
much less reliable for other second-line drugs
(para-aminosalicylic acid, ethionamide and
cycloserine
37.
Radiology
Chest X-ray
Non-specific investigation for TB
Not routinely indicated in sputum smear-positive
patients
Recommended
smear microscopy results are negative
suspected TB in children
Particularly useful where the proportion of
bacteriologically unconfirmed TB is likely to be high
(populations with a high incidence of HIV)
Pleural and pericardial effusions
Miliary TB.
Heaf test
Readat 3–7 days
Multipuncture method
Grade 1: 4–6 papules
Grade 2: Confluent papules forming ring
Grade 3: Central induration
Grade 4: >10 mm induration
42.
Tuberculin skin test(TST)-Montoux
test
5 IU of tuberculin (PPD) injected intradermally on
the ventral surface of the forearm and read after
48 to 72 hours
The diameter of induration is measured with a
ruler in mm across the forearm
Positive TST
≥ 5 mm
HIV infected
Immunocompromised patients
prednisolone therapy of ≥ 15 mg/day for ≥ 1 month
Malnourished children
≥ 10 mm
all other adults or children (BCG vaccinated or not).
43.
Tuberculin skin test(TST)
contd..
Role of TST
Diagnosis of TB in children
Identification of candidates for Isoniazid prophylaxis
Highly positive (> 20 mm) or phlyctenular reaction
can be considered as an argument in favour of
active TB
44.
False positive
TST
SevereTB (25% of
cases negative)
Newborn and elderly
HIV (if CD4 count <
200 cells/mL)
Malnutrition
Recent infection (e.g.
measles) or
immunisation
Immunosuppressive
drugs
Malignancy
Sarcoidosis
False negative
TST
BCG vaccination
Average diameter
after1 year is 10
mm (4 to 20 mm)
Expected to
disappear by 5 to
10 years.
Non-tuberculous
mycobacteria
45.
Interferon gamma releaseassays
(IGRAs)
no cross reactivity with prior BCG vaccination and
with most environmental mycobacteria
less sensitive test in HIV co-infected
expensive
46.
Principles of
IGRAs
A sampleof either purified
T cells or whole blood is
incubated in the presence of
antigens specific to
Mycobacterium tuberculosis
(ESAT-6, CEP-10)
The release of interferon-
gamma (IFN-γ) by the cells
is measured by enzyme-
lined immunosorbent assay
(ELISA)
ESAT (early secretory
T-SPOT.TB®
test
QuantiFERON®
–
TB Gold test
47.
Biopsies and fineneedle aspirate
cytology (FNAC)
Lymph nodes, bone and pleural lining
Specific granulomatous tissue, the presence
of giant Langhans' cells, and/or caseous
necrosis strongly correlate with TB.
AFBs are not always present
Molecular tests can be used on the specimens
obtained from FNAC of lymph nodes
48.
Biopsies and fineneedle aspirate
cytology (FNAC) contd..
Two smears with
Giemsa stain
Caseous necrosis,
granuloma, giants
cells, and epithelioid
cells or histocytes
1 or 2 with Ziehl-
Neelsen (ZN) stain
acid-fast bacilli (AFB)
G ranulomatous inflammation
characterised by large numbers of
macrophages and multinucleate
giant cells (white arrow).
The central area of this focus
shows caseous degeneration
(black arrow).
49.
Biopsies and fineneedle aspirate
cytology (FNAC) contd
Biopsy and culture of bone marrow and liver
tissue
good diagnostic yield in disseminated (miliary)TB
particularly in HIV infected patients, who also tend
to have positive blood culture
50.
Fluid Colour CellsAlbumin ∆,
Glucose
ADA
(U/L)
AFB
stain
Ascitic
fluid
Translucen
t yellow
> 300/mm3,
lymphocytic
Protein ≥ 30 g/L
SAAG < 1.1 g/dl
Revalta test
positive
>39 Negativ
e
(<2%)
Pleural
fluid
Straw 1,000-2,500/mm3),
predominant
lymphocytes,
L/N ratio >0.75
Protein ≥ 30 g/L
Revalta test
positive
>50 Negativ
e
Pericardia
l fluid
Sero-
sanguinou
s
Lymphocytes/monocyt
es
L/N ratio≥1
High protein >30 Positive
(40-
60%)
CSF Clear,
concentrat
ed
100 -1,000/mm3,
80% Lymphocytes
Proteins>0.40g/L
(Pandy test)
Glucose<60mg/L,
CSF/blood
glucose<0.5
>10 Positive
(<10%)
Laboratory tests on body
fluids
51.
Role of ADAin diagnosis of TB
Fluid ADA value
(U/L)
Sensitivity specificity
Ascitic fluid 39 100% 97%
Pleural fluid 50 92% 90%
Pericardial
fluid
30 94% 68%
CSF 10 79% 91%
52.
Xpert MTB/RIF inbody fluids
Not recommedded in pleural fluid
Has moderate sensitivity in CSF that can be
increased following centrifugation
Has modereate sensitivity in urine, specially
recommended in those with CD4 <50
53.
Other biological tests
LAM assay
based on detecting lipo-arabino-mannan (LAM)
a carbohydrate cell wall antigen that is excreted in the urine of
TB patients
The sensitivity of the LAM urine assay for most populations
are poor
An exception is the sensitivity of the LAM assay in patients
with CD4 counts < 200.
Sedimentation rate
almost always higher but very non-specific
normal sedimentation rate makes TB less likely but still
possible.
C-reactive protein
increased but very non-specific
Rapid blood tests for “serological diagnosis of TB”
Not very reliable in diagnosing active TB
Not recommended by WHO
54.
References
Davidsons Principlesand Practice of Medicine
22ed
Harrison's Principles of Internal Medicine 19th Ed
Kumar and Clarks Clinical Medicine 9th ed
Tuberculosis: Practical guide for clinicians,
nurses, laboratory technicians and medical
auxiliaries. 2014 Edition.
#8 Non-specificity, such that M. tuberculosis appears the same as non tuberculous mycobacteria (NTM)
#10 CPC cethylpyrodinium chloride, not compatible with MGIT
#11 A sputum Gram's stain specimen is considered satisfactory for interpretation when Neutrophil count >25 and epithelial cells <10 per low-power field.
#12 Light microscope for ZN staining
Fluorescence microscope with mercury vapor light sources/light emitting diode (LED) for Auramine staining.
#14 Word Health Organization and the International Union against Tuberculosis and Lung Disease (WHO-IUATLD)
#15 US Centre of Disease Control and American Thoracic Society (CDC-ATS)
#19 Egg based (Lowenstein-Jensen), Agar based (Middlebrook 7H10 or 7H11), Liquid (Middlebrook 7H12, MGIT 960)
Rapid culture techniques
Mycobacteria Growth Indicator Tube (MGIT)
Microscopic Observation Drug Susceptibility (MODS) assay.
Sputum culture has sensitivity 80% and specificity 98%.
#20 Conventional method of species identification (growth time, colony pigmentation and morphology, and varieties of biochemical tests).
#21 MGIT
The fluorescent compound is sensitive to the presence of oxygen dissolved in the broth. Initially, the large amount of dissolved oxygen quenches emissions from the compound and little fluorescence can be detected. Later, actively respiring microorganisms consume the oxygen and allow the fluorescence to be detected.
#24 Types of PCR
Long PCR: Used to amplify DNA over the entire length up to 25kb of genomic DNA segments cloned.
Nested PCR: Involves two consecutive PCR reactions of 25 cycles. The first PCR uses primers external to the sequence of interest. The second PCR uses the product of the first PCR in conjunction with one or more nested primers (as they lie/are nested within the first fragment) to amplify the sequence within the region flanked by the initial set of primers.
Inverse PCR: Used to amplify DNA of unknown sequence that is adjacent to known DNA sequence.
Quantitative PCR: Product amplification w r t time, which is compared with a standard DNA.
Hot start PCR: Used to optimize the yield of the desired amplified product in PCR and simultaneously to suppress nonspecific amplification.
Multiplex PCR: is a variant of PCR which enabling simultaneous amplification of many targets of interest in one reaction by using more than one pair of primer
Reverse Transcriptase PCR(RT-PCR): Based on the process of reverse transcription, which reverse transcribes RNA into DNA and was initially isolated from retroviruses
Real-time PCR: monitors the fluorescence emitted during the reaction as an indicator of amplicon production at each PCR cycle (in real time) as opposed to the endpoint detection
Application of PCR
DNA fingerprinting
Drug discovery
Genetic matching
Genetic engineering
Pre-natal diagnosis
Classification of organisms
Genotyping
Molecular archaeology
Mutagenesis
Mutation detection
Sequencing
Cancer research
#28 Xpert MTB/RIF Ultra (Xpert Ultra) approved in december 2017
The Xpert Ultra is available in the United States for research use only.
#34 TLA (thin layer agar)
MODS (microscopically observed drug susceptibility)
#39 CXR in TB
Infiltrates, nodules with or without cavitation in the upper lobes and in the superior segments of the lower lobes
Pleural effusions
Adenopathy in the mediastinum or hila (rare in TB in adults and adolescents)
Miliary disease
#42 Montoux induration 5–14 mm (equivalent to Heaf grade 2) and > 15 mm (Heaf grade 3–4)
#46 IGRA is preferred in age more than 5 years but TST is preferred in age less than 5 years due to the lack of studies of IGRA in age less than 5 years.
#47 QuantiFERON®–TB Gold In-Tube assay (also contains another specific Ag, TB 7.7)
#49 The golden standard of diagnosis for TB on tissue samples is hematoxylin-eosin stain, but Giemsa stain can be used as an alternative in remote areas with limited equipment.
#51 Pandy test
Add 3 drops of CSF to 1 ml of Pandy reagent (saturated phenol solution) in centrifuge tube and look for white cloud
The normal range of protein in CSF is 0.20-0.45 g/litre. The Pandy test is positive when protein is superior to 0.45 g/litre.
Rivalta test
Add 3 drops of pleural fluid/ascites to 2 ml of Revalta reagent (glacial acetic acid) in centrifuge tube and look for white cloud
The test is positive when the proteins are superior to 30 g/litre
The sensitivity of AFB smear and mycobacterial culture ascites fluid is low (less than 2 percent and less than 20 percent, respectively)
The yield of mycobacterial culture may be increased (up to 83 percent) if 1 L of ascitic fluid (concentrated by centrifugation) is cultured
SAAG is >1.1 in TB with cirrhosis
The sensitivity of ascites fluid ADA in patients with cirrhosis is lower(30%), likely due to poor humoral and T cell–mediated response, in such cases, it may be a helpful supportive diagnostic tool if lower thresholds are used (21 to 30 international units/L)
HIV-infected patients and patients already on TB medications may have lower levels of ADA
ADA is generally not a good test in cerebrospinal fluid
#55 a. When the patient’s serological status is unknown, this algorithm should be used in settings with HIV prevalence < 5%.
b. Patients are considered to be at low risk of multidrug-resistant TB (MDR-TB) if they do not meet one of the following criteria:
resident in areas with high MDR-TB prevalence;
all retreatment categories;
exposure to a known MDR-TB case;
patient remaining smear + at 2 months;
exposure to institutions with high risk of MDR-TB (e.g. prisons).
c. Danger signs: respiratory rate > 30/min and/or fever > 39°C and/or pulse rate > 120/min and/or unable to walk.
d. Smear microscopy: two sputum examinations performed on the same day.
e. Broad spectrum ATB:
• If no danger signs: amoxicillin for 7 days (NO fluoroquinolones);
• If danger signs: parenteral ATB (e.g. ceftriaxone).
f. Clinical response to a broad spectrum antibiotic does not rule out TB. Patient should be informed to return for reassessment if symptoms recur.
g. According to setting:
• Xpert MTB/RIF available: two sputum smear microscopy on the same day and one Xpert MTB/RIF from one of the samples collected for smear microscopy;
• Xpert MTB/RIF not available: two sputum smear microscopy on the same day.
h. In groups of patients with high level of resistance to isoniazid (> 10%) it is recommended to perform a conventional DST at baseline (and/or a line probe assay) in order to provide adequate treatment.
#56 i. According to setting:
• Prevalence of MDR-TB < 10%, patients seriously ill should immediately be initiated under empiric MDR-TB treatment. H and R will be included in the regimen until confirmation of MDR-TB by conventional methods. If the patient is stable, the clinician may choose to wait for confirmation before initiating a MDR treatment.
• Prevalence of MDR-TB ≥ 10%, patients should be initiated under empiric MDR-TB treatment. Consider adding H in settings where mono-resistance to R is not uncommon.
j. Clinical signs and chest X-ray (CXR) findings tend to be more typical in those who are HIV-negative having active TB
#57 a. When the patient’s serological status is unknown, this algorithm should be used in settings with HIV prevalence > 5%.
b. TB suspect is defined as: cough for more than 2 weeks or any cough with at least one of the following signs: loss of weight, night sweats, fever, and suspicion based on clinical judgment.
c. Danger signs: respiratory rate > 30/min and/or fever > 39°C and/or pulse rate > 120/min and/or unable to walk.
d. According to setting:
• Xpert MTB/RIF available: two sputum smear microscopy on the same day AND one Xpert MTB/RIF from one of the samples collected for smear microscopy;
• Xpert MTB/RIF not available: two sputum smear microscopy on the same day.
e. In patients groups with high level of resistance to isoniazid (> 10%) it is recommended to perform a conventional DST at baseline (and/or a line probe assay) in order to provide adequate treatment.
f. When possible a culture should be performed. A positive culture result at any point in time in the algorithm should lead to a full TB treatment.
g. TB treatment should be started when clinical signs AND chest X-ray (CXR) are suggestive of TB.
h. Broad spectrum ATB/PCP:
• If no danger signs: amoxicillin for 7 days (or recommended oral agent for community-acquired pneumonia in the area). Do NOT use fluoroquinolones;
• If danger signs: parenteral ATB (e.g. ceftriaxone) AND high dose cotrimoxazole.
i. If no danger signs: patient should be re-assessed after 7 days.
If danger signs: patient should be assessed daily and if no response, TB treatment should be considered after 3 to 5 days.
Clinical response to broad-spectrum ATB does not rule out TB. Patient should be informed to return for reassessment if symptoms recur.
j. Differential diagnosis of a coughing HIV-infected adult/adolescent: bacterial (including atypical) pneumonia, PCP, fungal infection, non-tuberculous mycobacteria, nocardiosis, Kaposi sarcoma and lymphoma.
k. The diagnosis should be based on clinical assessment, CXR and CD4 results, whether cotrimoxazole preventive therapy (CPT) was used, and other treatment already used in the patient. If the index of suspicion for active TB is high, empiric TB treatment should be initiated without waiting for diagnosis
confirmation. Other treatments such as broad-spectrum ATB or therapy for PCP may be needed in addition to TB treatment.
#58 l. In the absence of any improvement of clinical signs (no weight gain, persistent cough, pain, etc.) AND no improvement on CXR after 2 months of a well conducted TB treatment, diagnosis and treatment should be reconsidered. MDR-TB should also be considered.
m. In addition to the differential diagnosis in Note k above, DR-TB should be considered.
n. Immediately start empiric MDR treatment, even if positive predictive value of Xpert MTB/RIF for R resistance is low (this is done to avoid the rapid and high mortality due to untreated MDR-TB in HIV patients).
H and R should be included in the regimen until confirmation of MDR-TB by conventional methods if the patient comes from a group with less than a prevalence of MDR-TB < 10%.
In groups of patients with prevalence of MDR-TB ≥ 10%, patients should be initiated under an empiric MDR treatment without H or R, although one
can consider adding H in settings where mono-resistance to R is not uncommon.
#59 a.The following patients are considered to be at high risk of MDR-TB:
resident in areas with high MDR-TB prevalence;
all retreatment categories;
exposure to a known MDR-TB case;
patient remaining smear-positive at 2 months;
exposure to institutions with high risk of MDR-TB (e.g. prisons).
b.Groups of patients at risk of MDR-TB are also at risk of other types of DR-TB as well. DST to the first-line should be performed in order to provide adequate treatment for possible mono- or poly-drug resistance.
c.In populations with a prevalence < 10% of MDR-TB, the resistance to R diagnosed by Xpert MTB/RIF must be confirmed by conventional methods. Drug sensitivity testing (DST) to both first-line drugs and second line TB drugs should be performed if possible.
d.In groups of patients with prevalence of MDR-TB < 10%, the decision to start the MDR-TB treatment will be made on clinical presentation of the patient and immunological status.
Patients seriously ill and/or HIV+ should be initiated immediately under empiric MDR-TB treatment. H and R will be included in the regimen until confirmation by conventional methods.
In groups of patients with prevalence of MDR-TB ≥ 10%, the patient should be initiated using an empiric MDR-TB treatment. Consider adding H in settings where mono-resistance to R is not uncommon.
e. Baseline sputum smear microscopy result on 1 specimen in order to: 1) allow patient follow-up with microscopy; 2) take immediate decisions related to TB infection control.