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FAIRsharing-Standards-4-GSC-Aug23.pdf
This document summarizes a presentation given by Susanna Sansone at the GSC 23rd meeting education day in Bangkok, Thailand on August 7, 2023. The presentation discussed standards across life sciences, including definitions of different types of standards and over 1,600 identified standards. It covered standard organizations and grassroots groups, as well as the FAIRsharing database which catalogs over 2,885 standards and databases and aims to promote their use and value across research.
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FAIRsharing-Standards-4-GSC-Aug23.pdf
- 1. GSC 23rd meeting- Education day, Bangkok, Thailand, 7 August, 2023 slideshare.net/SusannaSansone Academic Lead for Research Practice Professor of Data Readiness Susanna-Assunta Sansone, PhD Associate Director 0000-0001-5306-5690 @SusannaASansone [email protected] datareadiness.eng.ox.ac.uk Standards across Life Science
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- 3. CC BY 4.0International Record-level discoverability Resource-level discoverability and interoperability Deepest, record level interoperability Different types *
- 4. CC BY 4.0International Record-level discoverability Resource-level discoverability and interoperability Deepest, record level interoperability A database or among databases Datasets in a database Datasets and data reuse Different types and granularity
- 5. CC BY 4.0International Record-level discoverability Resource-level discoverability and interoperability Deepest, record level interoperability A database or among databases Datasets in a database Datasets and data reuse Different types and granularity
- 6. CC BY 4.0International Standards to report information at dataset level
- 7. CC BY 4.0International Identifiers Terminologies Guidelines Formats Four types of reporting standards
- 8. CC BY 4.0International Identifiers Terminologies Guidelines Formats Unambiguous, persistent and context-independent schema to identify data and metadata elements Four types of reporting standards
- 9. CC BY 4.0International Identifiers Terminologies Guidelines Formats Minimum information reporting requirements, or checklists to report the same core, essential information Unambiguous, persistent and context-independent schema to identify data and metadata elements Four types of reporting standards
- 10. CC BY 4.0International Identifiers Terminologies Guidelines Formats Controlled vocabularies, thesauri, ontologies to disambiguate terms and enable semantic relationships Minimum information reporting requirements, or checklists to report the same core, essential information Unambiguous, persistent and context-independent schema to identify data and metadata elements Four types of reporting standards
- 11. CC BY 4.0International Identifiers Terminologies Guidelines Formats Conceptual model, conceptual schema, exchange formats to represent, contain and move information Controlled vocabularies, thesauri, ontologies to disambiguate terms and enable semantic relationships Minimum information reporting requirements, or checklists to report the same core, essential information Unambiguous, persistent and context-independent schema to identify data and metadata elements Four types of reporting standards
- 12. CC BY 4.0International Identifiers Terminologies Guidelines Formats Natural, engineering, humanities & social sciences 781 574 245 34 More than 1648 data and metadata standards
- 13. CC BY 4.0International MIAME MIRIAM MIQAS MIX MIGEN ARRIVE … MIAPE MIASE … MISFISHIE …. REMARK CONSORT SRAxml SDTM FASTA DICOM OMOP … SBRML SEDML … CDASH ISA CML MITAB … AAO CHEBI OBI PATO ENVO MOD BTO IDO … TEDDY PRO … XAO DO … VO EC number URL PURL LSID Handle ORCID RRID … InChI … IVOA ID … DOI Life and biomedical sciences Identifiers Terminologies Guidelines Formats 675 322 180 11 More than 1188!
- 14. CC BY 4.0International MIAME MIRIAM MIQAS MIX MIGEN ARRIVE … MIAPE MIASE … MISFISHIE …. REMARK CONSORT SRAxml SDTM FASTA DICOM OMOP … SBRML SEDML … CDASH ISA CML MITAB … AAO CHEBI OBI PATO ENVO MOD BTO IDO … TEDDY PRO … XAO DO … VO EC number URL PURL LSID Handle ORCID RRID … InChI … IVOA ID … DOI Standard organizations, e.g.: Grass-roots groups, e.g.: Life and biomedical sciences Identifiers Terminologies Guidelines Formats 675 322 180 11 More than 1188!
- 15. CC BY 4.0International Standard organizations, e.g.: Grass-roots groups, e.g.: • Industry-level standards • Mostly regulators-driven • Participation is often regulated • Standards are sold or licenced • Formal development process, often less flexible, could be lengthy • Charges apply to advanced training or programmatic access • Mostly research-level standards • Open to any interested party • Volunteering efforts • Standards are free for use • Development process varies, more flexible and adaptable to changes • Minimal or little funds for carry out the work, let alone provide training Understanding their life cycle and landscape Identifiers Terminologies Guidelines Formats
- 16. CC BY 4.0International An informative & educational resource
- 17. CC BY 4.0International Promotes the value and use of standards, databases and policies in all disciplines, by engaging stakeholders across all sectors, through all stages of the research life cycle Researchers Developers and curators Journal publishers Societies and Alliances Librarians and Trainers Funders Mission
- 18. CC BY 4.0International Scope Guides consumers to discover, select and use these resources with confidence Helps producers to make their resources more visible, more widely adopted and cited
- 19. CC BY 4.0International Over 2885 standards & databases in the Life Science Identifiers Terminologies Guidelines Formats
- 20. CC BY 4.0International 1. Deprecate a record when a resource has been retired and is no longer available 2. Deprecate a record when a resource has been superseded, e.g., merged into another Tracking evolution: standards as dynamic entities
- 21. CC BY 4.0International doi.org/10.25504/FAIRsharing.azqskx
- 22. CC BY 4.0International Unique identifier to refer to this standard record doi.org/10.25504/FAIRsharing.azqskx
- 23. CC BY 4.0International Maintainer(s) Database(s) API Life cycle status License Standard(s) Policy(s) Unique identifier to refer to this standard record doi.org/10.25504/FAIRsharing.azqskx
- 24. CC BY 4.0International Maintainer(s) Database(s) API Life cycle status License Standard(s) Policy(s) Unique identifier to refer to this standard record Attribution for maintainer via their ORCID doi.org/10.25504/FAIRsharing.azqskx
- 25. CC BY 4.0International doi.org/10.25504/FAIRsharing.azqskx
- 26. CC BY 4.0International doi.org/10.25504/FAIRsharing.azqskx
- 27. CC BY 4.0International doi.org/10.25504/FAIRsharing.azqskx
- 28. CC BY 4.0International doi.org/10.25504/FAIRsharing.azqskx
- 29. CC BY 4.0International GSC collection of standards interlinked to databases and policies fairsharing.org/GSC doi.org/10.25504/FAIRsharing.9aa0zp
- 30. CC BY 4.0International GSC collection of standards interlinked to databases and policies fairsharing.org/GSC
- 31. CC BY 4.0International Educational material on standards and databases for all stakeholders fairsharing.org/educational
- 32. CC BY 4.0International Educational material on standards and databases for all stakeholders fairsharing.org/educational#standards
- 33.