This paper presents a high-performance intrusion detection system (HPC-NMF-IDS) utilizing non-negative matrix factorization (NMF) to efficiently analyze large IoT traffic datasets in real-time. The system employs parallel implementation on a high-performance computer, achieving significant improvement in processing speed and accuracy, with the ability to handle one million samples in just 31 seconds and an impressive detection accuracy of 98%. The study aims to address limitations in traditional machine learning-based intrusion detection systems by leveraging HPC capabilities for large-scale data analysis.