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Doctoral seminar-I
Machine Learning : Modern Tool in Plant
Disease Diagnosis
Presented by -
Prince Kumar Gupta
Ph.D (Ag.) student
G.B.P.U.A.& T, Pantnagar
Contents
Importance of Plant Disease
Diagnosis of Plant Pathology
Artificial Intelligence
Introduction of Machine
Learning
Steps in M.L algorithm
Applications of M.L
Deep Learning
M.L based Mobile APPs
Case studies
Future aspects and Conclusion
Importance of Plant Disease
Plant disease causes substainable
looses in yield, leading to huge
economic losses.
Not only hamper the productivity,
but also affect the human and
livestock health
It exploit plant, resulting in low productivity
which acts as threat for food and nutritional
security.
Rekha et al.,2017
Diagnosis of plant disease is to identify the disease
and to determine the causal agent (Pathogen).
Diagnosis of Plant Disease
Traditional method
of identification
–Visual examination.
Laboratory
1 Soil analysis and measurement of pH
2 Biochemical method
3 Microscopic examination
4 Serological methods
5 Use of methods rely on DNA
Direct
PCR
FISH
ELISA
Immunoflurescence
Flow cytometry
Indirect
Thermography
Florescence imaging
Hyperspectral Technique
Artificial intelligence
Current Prospectives:
Fang et al.,2015
Artificial Intelligence
1956, John Mc Carty
‟The science and
engineering of making
intelligent machine”
System able to perform
task that require human
intelligent-
Visual perception,
Speech recognition, face
recognition and
Translation of languages
AI: Not a system ,
AI – Implemented in system.
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
Key Terminologies
Data into information
Problem solving tool
Combination of CS engineering and
Statistics
Interpretet data and act on it
Enhance performance using past
experiences
what?
Learning is any process by which a system improves
performance from experience
Term Machine learning was coined in 1959 by Arthur Samuel.
Science of making computer learn and act like human by feeding
data and information without being explicitly programmed
The subset of Artificial Intelligence that work automatically or
give the instructions to a particular system to perform a action
and enhanced performance from past experience.
Goal :
Understand the structure of given data and fit data into models
that can be understood and utilized by the people.
Alex et al.,2008
Traine the
system by
feeding data
Analyse the
data
ResultMachine learning makes prediction and
decision based on past data
System learn (algorithm)
Data input
(for testing)
images
Why machine learning?
Control: Varieties of
fungicides are available to
control diseases.
Crop disease
(presence of disease mainly
reflected by symptoms on
leaves )
Need: Automatic, accurate and
less expensive Machine Vision
System for detection of diseases
from the image and to suggest a
proper management
For accurate plant disease
diagnosis and effective chemicals-
a difficult task - requires experts
advise - time consuming and
expensive
Why
now ?
Flood of available
data
Increasing
computational
power
Progress in
available
algorithms
&
Theory developed
by researchers
Increasing
support from
industries
Why
now ?
Steps in Machine Learning
1. Collection of
data (images)
2. Tabulation
3. Data
Prepration
High quality
Training of data
Clean dataOrganize data
Elimination
Create high
quality data
Steps in Machine Learning
4. Data Input
5. Data
Processing
6. Data Output
First stage - raw
data begins - form
usable information.
Machine learning
algorithm
In form of images,
text etc.
8. Data
Storage
7. Prediction
Alex et al.,2008
Database
Types of Machine Learning algorithm
Supervised learning
1. Training model
2. Both input
(image) +Visual
symptoms
4. Naire Baye
algorithm
3. Classsification Learning algorithm
Model
Blast of rice having
specific disease
symptoms
Linear Regression
Nearest Neighbor
Guassian Naive Bayes
Decision Trees
Support Vector Machine
(SVM)
Random ForestResult
Unsupervised learning
1. Only input
(images)
3. K-mean
algorithm
2. Clustering
(on the basis of
features)
result
Reinforcement learning algorithm
Data (image)
Model using
algorithm
Result save in
database
For detection test
If result given by model is
same as data already store in
model database then its
means model is accurant and
rewarded as improving
efficiency .
machine learning a a tool for disease detection and diagnosis
Application in Agriculture
Data aggregation- water
uses in irrigation.
Signal sensor is used viz;
GSM and soil sensor.
Soil sensor- provides
moisture, and water level
regasrding informations.
GSM- Collects weather
data information
Through machine
learning software,
drone can adopt to
learn to navigate
better research and
evaluates crop and
livestock based on
the data that
already feed.
Robocrop: smart robert
for picking fruits
Crop monitoring
system
Animal identification and Health
monitoring.
Alibaba and Dekon
By observing movement of pig/day - evaluate health of particular pig.
By recording sound of pig cough they monitor the spread of disease.
By use of machine learning, the mortality of piglet reduced.
Controlling Greenhouse Climate
(Liakos et al.,2018)
Handling huge amount
of
data
Complex Problems
Feature Extraction
Deep learning....
Deep learning is a subset of machine learning
Based on Artificial Neural Network
Inspired by the Biological Neural Network
Different algorithm are used most common
Convolution Neural Network (CNN)
Convolutional Neural Network
CNN commonly applied to analyzing visual imagery using neurons.
Applicable in image recognition and image classification using filters.
Convolution Pooling
Scanning
Input (image number, width, height) identfy by machine in form of pixel (having
image value)and these are then scan by filter (convolution layer).
Filter are mainly of different type: color, edge,corner filter
And of different size with some random values.
convolution convolutionpooling pooling
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
Methodology
Collection of image:
Healthy: 95,
Bscterial blight: 125,
Blast: 170 ,
Sheath rot: 110 and
Brown spot: 150.
Pre processing
stage……..
Image are resize and
cropped into pixel (300 x
450)
Only leaf portion with the
disease part is present in
image.
K-mean clustering based
segmentation
Feature extraction
Color Texture
Experimental results
Accuracy (%) when model implement……
Normal : 90.57; Bacterial blight: 95.78; Blast: 98.9; Brown
spot: 94 and Sheath rot: 92
machine learning a a tool for disease detection and diagnosis
machine learning a a tool for disease detection and diagnosis
Layer Type Filter size Output size
L 1 CONV 3X3 128X128X32
POOL 2X2 64X64X32
L 2 CONV 4X4 61X61X64
POOL 2X2 64X64X32
L 3 CONV 1X1 30x30x128
POOL 2X2 15x15x128
Training accuracy (80%) Test accuracy (20%)
99.21 % 99.32%
Precision performance of the model
Healthy 1.0
Septorial leaf blight 0.99
Frogeye 0.99
Downy mildew 0.98
Result
Linking machine learning with DSS (Decision Support
System) for better advisory service for farmer.
Image processing and spreading the usage of the model by
training it for plant disease recognition on wider land areas.
Severity of the
disease
Price list for
the pesticides
Conclusion…..
Automatic, Speed and Accuracy.
Innovative, efficient & fast
interpreting algorithms help in plant disease detection
Bridge the gap between experimentation
and real life application.
machine learning a a tool for disease detection and diagnosis

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machine learning a a tool for disease detection and diagnosis

  • 1. Doctoral seminar-I Machine Learning : Modern Tool in Plant Disease Diagnosis Presented by - Prince Kumar Gupta Ph.D (Ag.) student G.B.P.U.A.& T, Pantnagar
  • 2. Contents Importance of Plant Disease Diagnosis of Plant Pathology Artificial Intelligence Introduction of Machine Learning Steps in M.L algorithm Applications of M.L Deep Learning M.L based Mobile APPs Case studies Future aspects and Conclusion
  • 3. Importance of Plant Disease Plant disease causes substainable looses in yield, leading to huge economic losses. Not only hamper the productivity, but also affect the human and livestock health It exploit plant, resulting in low productivity which acts as threat for food and nutritional security. Rekha et al.,2017
  • 4. Diagnosis of plant disease is to identify the disease and to determine the causal agent (Pathogen). Diagnosis of Plant Disease Traditional method of identification –Visual examination.
  • 5. Laboratory 1 Soil analysis and measurement of pH 2 Biochemical method 3 Microscopic examination 4 Serological methods 5 Use of methods rely on DNA Direct PCR FISH ELISA Immunoflurescence Flow cytometry Indirect Thermography Florescence imaging Hyperspectral Technique Artificial intelligence Current Prospectives: Fang et al.,2015
  • 6. Artificial Intelligence 1956, John Mc Carty ‟The science and engineering of making intelligent machine” System able to perform task that require human intelligent- Visual perception, Speech recognition, face recognition and Translation of languages AI: Not a system , AI – Implemented in system.
  • 9. Key Terminologies Data into information Problem solving tool Combination of CS engineering and Statistics Interpretet data and act on it Enhance performance using past experiences
  • 10. what? Learning is any process by which a system improves performance from experience Term Machine learning was coined in 1959 by Arthur Samuel. Science of making computer learn and act like human by feeding data and information without being explicitly programmed The subset of Artificial Intelligence that work automatically or give the instructions to a particular system to perform a action and enhanced performance from past experience. Goal : Understand the structure of given data and fit data into models that can be understood and utilized by the people. Alex et al.,2008
  • 11. Traine the system by feeding data Analyse the data ResultMachine learning makes prediction and decision based on past data System learn (algorithm) Data input (for testing) images
  • 12. Why machine learning? Control: Varieties of fungicides are available to control diseases. Crop disease (presence of disease mainly reflected by symptoms on leaves )
  • 13. Need: Automatic, accurate and less expensive Machine Vision System for detection of diseases from the image and to suggest a proper management For accurate plant disease diagnosis and effective chemicals- a difficult task - requires experts advise - time consuming and expensive
  • 14. Why now ? Flood of available data Increasing computational power Progress in available algorithms & Theory developed by researchers Increasing support from industries Why now ?
  • 15. Steps in Machine Learning 1. Collection of data (images) 2. Tabulation 3. Data Prepration High quality Training of data Clean dataOrganize data Elimination Create high quality data
  • 16. Steps in Machine Learning 4. Data Input 5. Data Processing 6. Data Output First stage - raw data begins - form usable information. Machine learning algorithm In form of images, text etc.
  • 17. 8. Data Storage 7. Prediction Alex et al.,2008 Database
  • 18. Types of Machine Learning algorithm Supervised learning 1. Training model 2. Both input (image) +Visual symptoms 4. Naire Baye algorithm 3. Classsification Learning algorithm Model Blast of rice having specific disease symptoms Linear Regression Nearest Neighbor Guassian Naive Bayes Decision Trees Support Vector Machine (SVM) Random ForestResult
  • 19. Unsupervised learning 1. Only input (images) 3. K-mean algorithm 2. Clustering (on the basis of features) result
  • 20. Reinforcement learning algorithm Data (image) Model using algorithm Result save in database For detection test If result given by model is same as data already store in model database then its means model is accurant and rewarded as improving efficiency .
  • 22. Application in Agriculture Data aggregation- water uses in irrigation. Signal sensor is used viz; GSM and soil sensor. Soil sensor- provides moisture, and water level regasrding informations. GSM- Collects weather data information
  • 23. Through machine learning software, drone can adopt to learn to navigate better research and evaluates crop and livestock based on the data that already feed.
  • 24. Robocrop: smart robert for picking fruits Crop monitoring system
  • 25. Animal identification and Health monitoring.
  • 26. Alibaba and Dekon By observing movement of pig/day - evaluate health of particular pig. By recording sound of pig cough they monitor the spread of disease. By use of machine learning, the mortality of piglet reduced.
  • 28. Handling huge amount of data Complex Problems Feature Extraction
  • 29. Deep learning.... Deep learning is a subset of machine learning Based on Artificial Neural Network Inspired by the Biological Neural Network Different algorithm are used most common Convolution Neural Network (CNN)
  • 30. Convolutional Neural Network CNN commonly applied to analyzing visual imagery using neurons. Applicable in image recognition and image classification using filters. Convolution Pooling Scanning
  • 31. Input (image number, width, height) identfy by machine in form of pixel (having image value)and these are then scan by filter (convolution layer). Filter are mainly of different type: color, edge,corner filter And of different size with some random values. convolution convolutionpooling pooling
  • 40. Methodology Collection of image: Healthy: 95, Bscterial blight: 125, Blast: 170 , Sheath rot: 110 and Brown spot: 150.
  • 41. Pre processing stage…….. Image are resize and cropped into pixel (300 x 450) Only leaf portion with the disease part is present in image.
  • 44. Accuracy (%) when model implement…… Normal : 90.57; Bacterial blight: 95.78; Blast: 98.9; Brown spot: 94 and Sheath rot: 92
  • 47. Layer Type Filter size Output size L 1 CONV 3X3 128X128X32 POOL 2X2 64X64X32 L 2 CONV 4X4 61X61X64 POOL 2X2 64X64X32 L 3 CONV 1X1 30x30x128 POOL 2X2 15x15x128 Training accuracy (80%) Test accuracy (20%) 99.21 % 99.32% Precision performance of the model Healthy 1.0 Septorial leaf blight 0.99 Frogeye 0.99 Downy mildew 0.98 Result
  • 48. Linking machine learning with DSS (Decision Support System) for better advisory service for farmer. Image processing and spreading the usage of the model by training it for plant disease recognition on wider land areas. Severity of the disease Price list for the pesticides
  • 49. Conclusion….. Automatic, Speed and Accuracy. Innovative, efficient & fast interpreting algorithms help in plant disease detection Bridge the gap between experimentation and real life application.