Menstrual dysfunction can occur due to issues with the hypothalamus, pituitary, ovary, or outflow tract. Amenorrhea is the absence of menstruation and can be primary, secondary, physiological, or pathological. Specific causes of amenorrhea include issues with the hypothalamus, pituitary, ovaries, or uterus. Polycystic ovarian syndrome is a common cause of amenorrhea and irregular periods characterized by cysts on the ovaries and increased male hormones.