Meristem, embryo, and protoplast culture are three methods of micro-propagation. Meristem culture uses small stem tips placed in media to produce disease-free plants. Embryo culture excises embryos and places them in media to overcome issues like embryo abortion. Protoplast culture isolates plant cells using enzymes and regenerates plants from cultured protoplasts. The main advantages are producing clones and disease-free plants, while disadvantages include high costs and not all plants being amenable to tissue culture.