Quality Assurance in Clinical Microbiology

Santosh Yadav
Quality Assurance in Clinical Microbiology
Santosh Yadav
M.Sc. Clinical Microbiology
Dept. of Microbiology
Institute of Medicine
Tribhuvan Univarsity Teaching Hospital, Nepal
Date:-

Santosh Yadav
IMPORTANCE
Microbiological investigations are important in the
• diagnosis,
• treatment, and
• surveillance of infectious diseases and
• policies regarding the selection and use of
antimicrobial drugs.
It is, therefore, essential that test reports are relevant,
reliable, timely, and interpreted correctly.

Santosh Yadav
Quality
 According to ISO quality is defined as totality of characteristics
of an entity that bear on its ability to satisfy stated and implied
needs
 A diagnostic test in Clinical Microbiology to be of good quality ,
must be clinically relevant i.e. it must help in the prevention or
treatment of disease
 To state a quality, should answer;
- Is the result correct? = Reliability
- Is the same result obtained when test is repeated?= Reproducibility
- Is the test rapid enough to be of use to the doctor in prescribing
treatment ? =Speed

Santosh Yadav
Factors influencing Quality
 Quality is not only achieved through improving and controlling the
analytical process alone without parallel improvement and control
of pre-analytical and post analytical stage
 Pre - Analytical stage
- Patient preparation
- Proper sample selection
- Proper collection and transportation
- Details of the patient and specimen identification
- Knowledge of the normal range of the results and abnormalities
- selection of right test method

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Analytical stage - actual laboratory testing
a) Detailed procedure for examining different specimens.
b) Staining techniques and QC of stains.
c) Aseptic techniques and safe handling of infectious material.
d) Preparation and QC of culture media and preservation of stock
strains.
e) Inoculation of liquid and solid media.
f) Reading and interpretation of cultures.
g) Techniques used to identify pathogens.
h) Antimicrobial sensitivity testing and QC of procedures and
antibiotic discs.
i) Cleaning and QC of equipment used in microbiology laboratory.
j) Immunologic techniques and QC of antigen and antibody
reagents.
k) Safe working practices.
l) Disposal of specimens and cultures.
m) Cleaning of glassware, plasticware, etc.
n) Sterilization procedures and their control.

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Post Analytical stage
 Final report writing
 Interpretation of report by clinician
 Instruction of appropriate therapy
 Others-
-Accuracy
-Bias
-Error
The difference between an observed or measured value and the best
obtainable estimates of its true value

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 Laboratory professionals now realize that QC is only a
small part of the issue of quality. Even when the laboratory
has effectively controlled media, reagents, and
instruments, the quality of the test result is poor if the
specimen had degraded before arriving in the
laboratory but was still tested. Suppose a specimen
contained the wrong patient name; again, the media can be
top quality, the incubator temperature accurate, and the
technologist very competent, but if the results are recorded
on the wrong patient chart, quality patient care
management does not exist for the intended patient.
 It is now important to realize that preanalytic, analytic,
and postanalytic activities all affect quality. An
outcome can be interrupted or destroyed at any point in
the process.

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TOTAL QUALITY MANAGEMENT(TQM)
 TQM means all those activities in the laboratory which controls
the every variable that could possibly affect the quality of the
test results. eg. In Gram stain
 Ideal situation of TQM may not be possible but a level of quality
assurance that can control most of the factors which are likely to
affect the test results can be attained

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Good Laboratory Practices(GLP)
Performance of all the activities of the laboratory in the best possible
way so that the results obtained are of the highest possible accuracy
•Proper collection of samples
• Appropriate identification of specimens with special labels on hazardous
specimens
• Prompt transportation to laboratory at appropriate temperature
• Collection and storage under conditions which prevent deterioration of the
sample before the performance of Test (e.g for anaerobic culture)
• Accurate performance of test
• Release of reports
• Delivery of reports to the correct destination in the shortest possible time

Santosh Yadav
Standard operating procedures (SOPs)
Each laboratory must have SOPs, sometimes referred to as the local
laboratory bench manual.
It is required:-
a) to improve and maintain the quality of laboratory service to
patients and identify problems associated with poor work
performance.
b) to provide laboratory staff with written instructions on how to
perform tests consistently to an acceptable standard in the
laboratory.
c) to help avoid short-cuts being taken when performing tests.
d) to provide written standardized techniques for use in the
training of laboratory personnel.
e) to facilitate the preparation of a list and inventory of essential
reagents, chemicals and equipment.
f) to promote safe laboratory practice.

Santosh Yadav
Quality Criteria In Microbiology
 Clinical relevance - contribution of test to the prevention or cure of
infectious diseases
• If Streptococcus pyogens is isolated, a full antibiograms has no clinical
relevance since benzyl penicillin is the drug of choice, and this is always
active in vitro.
• If Escherichia coli is isolated from a sporadic case of non-bloody
diarrhoea, identification of the serotype is of no clinical relevance, since
there is no clearly established correlation between serotype and
pathogenicity
Good quality test is one that is accurate and gives useful results for the prevention
and cure of infection

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 Reliability: correct result
 For tests that give quantitative results, reliability is
measured by how close the results are to the true value
— measurement of minimal inhibitory concentration
(MIC) values of antibiotics in vitro;
 For tests that give qualitative results, reliability is
measured by whether the result is correct. Some
examples of tests of this kind are:
— identification of pathogens;

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 Reproducibility: or precisiom
- same result with repetition of the test i.e. precision
- Reduced by lack of homogeneity(mixture organism)
and lack of stability (multiplication or die).

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 Efficiency:
• Its Ability to give the correct diagnosis of the pathogen or
pathological condition
• Measured by two criteria
For example, the sensitivity of MacConkey agar is poor for the
isolation of Salmonella Typhi from stool. This important enteric
pathogen is often missed because of overgrowth by nonpathogenic
intestinal bacteria.

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For example:
• Ziehl–Neelsen staining of sputum is highly specific for diagnosing
tuberculosis, because it gives only a few false-positive results
-

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Quality Assurance
 QUALITY ASSURANCE is the sum of all those activities in
which the laboratory is engaged to ensure that test results are of
good quality
 World Health Organization(WHO) defined quality assurance as
“total process whereby the quality of laboratory reports can be
guaranteed”
 Summarized as- right result, at the
right time, on the
right specimen, from the
right patient, with result interpretation based on
right reference data, and at the
right price
 Help to detect how to ensure the quality of investigations result

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Features of Quality Assurance
 Comprehensive – to cover every step from collection of specimen
to report dispatch
 Rational - to concentrate in the most critical step in the cycle
 Regular - to provide regular monitoring of test procedures
 Frequent - to detect and errors as they occur
GOOD-QUALITY LABORATORY SERVICES MEAN GOOD-
QUALITY MEDICINE

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Types Of Quality Assurance
 INTERNAL QUALITY ASSURANCE - Quality Control
 EXTERNAL QUALITYASSURANCE - Quality Assessment
 Internal quality assurance:-Each laboratory has programme
to check the quality of its own test
 Ideally , involves-
 Continuous monitoring of test quality
 Comprehensive checking of all steps from collection of specimen to report
dispatch
INTERNAL QUALITY ASSURANCE IS ABSOLUTELY ESSENTIAL
FOR GOOD OPERATING PROCEDURE

Santosh Yadav
Quality Control(QC)
 Ensures that information generated by a laboratory is accurate,
reliable and reproducible
 Accomplished by
 assessing the quality of specimens;
 monitoring the performances of test procedures, reagents, media,
instruments, and personnel;
 reviewing the test results; and
 documenting the validity of test methods

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INTERNAL QUALITY CONTROL contd….
- Set of procedures undertaken to ensure quality from
the collection of specimens, the performance of the
test upto analytical results, and the procedure being
planned, ordered and followed up

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Aspects of Internal Quality Control
 Cleaning of the working space,
 Personal hygiene,
 Safety precautions,
 Designated eating and smoking areas located outside the laboratory,
 Handling and disposal of infected material,
 Appropriate vaccinations for workers, e.g. hepatitis B,
 Care of equipment,
 Collection of specimens,
 Registration of specimens,
 Elimination of unsuitable specimens,
 Processing of specimens,
 Recording of results,
 Reporting of results

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Quality Control of Equipment
 Good quality tests cannot be performed if the equipment is either
of poor quality or poorly maintained

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Inoculating loop Remove deposits by dipping in sand or clean
by wetting with alcohol and igniting
Calibrate each new loop / or after
1 week

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Sterilization control
Hot air oven Autoclave
 Physical: Temperature chart
recorder and thermocouple
 Chemical: Browne’s tube
(green spot, color changes
from red to green)
 Biological: spores of Bacillus
subtilis or non-toxigenic
strain of Clostridium tetani
on paper strips
 Physical -thermocouple and
temperature chart recorder.
 Chemical -Browne’s tube and
succinic acid (whose melting
point is 121oC) and Bowie
Dick tape. Bowie Dick tape is
applied to articles being
autoclaved. If the process has
been satisfactory, dark brown
stripes will appear across the
tape.
 Biological-paper strip containing
spores of Bacillus
stearothermophilus.

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Browne tube- glass tube containing heat
sensitive dye

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Quality Control Of Culture Media
 Prepared form basic ingredients or from commercially available
dehydrated powders or purchased ready
ORDERING AND STORAGE OF DEHYDRATED MEDIA
 Order quantities that will be used up within 6 months or at most 1
year and working media should be used up within one month
 Record date and amount on receiving the container
 Store in dark, cool ,well ventilated place and protect against
sunlight
 Discard all dehydrated media that are either caked or darkened
 Keep written records of media in stock

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 Preparation of media:-
strictly according to manufacturers guide

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Storage of Prepared Media
 Protect against light
 Protect against heat
 Media containing blood, other organic additives, or antibiotics
should be stored in the refrigerator
 Typical shelf-lives of media are:
o Tubes with cotton-wool plugs,= 3 weeks;
o Tubes with loose caps,= 2 weeks;
o Containers with screw-caps, =3 months;
o Petri dishes, if sealed in plastic bags, =4 weeks

Santosh Yadav
Quality Control Of Prepared Media
 pH testing: If the medium is prepared from basic ingredients,
it should be allowed to cool before the pH is tested; If the pH
differs by more than 0.2 units from the specification, adjust with
acid or alkali or prepare a new batch
 Sterility testing: Take 3–5% of each batch and incubate at 35 C
for 2 days ,refrigerate rest. If more than two colonies per plate are
seen, discard the whole batch
 Performance testing: Laboratory should keep a set of stock strains
for monitoring the performance of media
Standard Strains for quality control
Staphylococcus aureus (ATCC 25923)
Escherichia coli (ATCC 25922)
Pseudomonas aeruginosa (ATCC 27853)
Enterococcus faecalis (ATCC 29212)

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Medium Incubation Control Organism Expected Result
Blood Agar 24h, CO2 S. aureus Growth and beta-haemolysis
S.pneumoniae Growth and alpha-haemolysis
Chocolate agar 24h, CO2 H.influenzae Growth
MacConkey agar With
crystal violet
24h E.coli Red colonies
P.mirabilis Colourless colonies (no swarming)
E.faecalis No growth
Methyl red/Voges-
Proskauer broth
48h E.coli Positive/negative
K.pneumoniae Negative/positive
Mueller-Hinton agar 24h E.coli ATCC 25922 Acceptable zone sizes
P.aeruginosa ATCC 27853 Acceptable zone sizes
Peptone water (indole) 24h E.coli Positive
K.pneumoniae Negative
Simmons citrate (incubate
with loose screwcap)
48h E.coli No growth
K.pneumoniae Growth, blue colour
Thiosulfate citrate bile salt
(TCBS) agar
24h Vibrio spp. (non agglutinable Yellow colonies
Thayer Martin Agar 24h, CO2 N.meningitidis Growth
N.gonorrhoeae Growth
Staphylococci No growth
E.coli No growth
Performance tests on commonly-used media

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Procedure/result Test Control organism Expected reaction
Catalase S. aureus + Bubbling reaction
Streptococcus spp. – No bubbling
Coagulase S. aureus + Clot formation in 4 hours
Indole E. coli + Red ring at surface
E. aerogenes – Yellow ring at surface
Methyl red E. coli + Instant red colour
E.. aerogenes – No colour change
Oxidase P.aeruginosa + Purple colour in 20 seconds
E. coli – No color in 20 seconds
Voges E. aerogenes + Red colour
Proskauer E. coli – No colour change
Bacitracin disc Streptococcus group A + Zone of inhibition
E. faecalis – No Zone of inhibition
Optochin disc S. pneumoniae + Zone of inhibition
S. viridans – No zone of inhibition
Oxidase disc P.aeruginosa + Purple colour in 30 seconds
E. coli – No change in colour
Quality control of Reagents and Tests

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Quality Control In Antibiotic Susceptibility Testing
 Discs should be of correct diameter (6.35mm) and of correct potency
 Stock supply should be stored frozen (-20 C)
 Working supply should be kept no longer than 1 month in a refrigerator (2–
8 C)
 Only Mueller–Hinton agar of performance-tested quality and pH (7.2–7.4)
should be used
 Inoculum should be standardized against the turbidity standard
 Zone sizes should be measured and interpreted by referring to a table of
critical diameters
 Tests should be carried out with the three standard strains:
- when a new batch of discs is put into use;
- when a new batch of medium is put into use;
-once a week, in parallel with the routine antibiograms

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Factor Influence
Inoculum density Larger zones with light inoculum and vice versa
Timing of disc
application
If after application of disc, the plate is kept for longer time at room temperature,
small zones may form
Temperature of
incubation
Larger zones are seen with temperatures < 35oC
Incubation time Ideal 16-18 hours; less time does not give reliable results
Size of the plate Smaller plates accommodate less number of discs
Depth of the agar
medium
Thin media yield excessively large inhibition zones and vice versa
Proper spacing of
the discs
Avoids overlapping of zones
Potency of
antibiotic discs
Deterioration in contents leads to reduced size
Composition of
medium
Affects rate of growth, diffusion of antibiotics and activity of antibiotics
Factors influencing zone size in antibiotic susceptibility testing

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Acidic pH of medium Tetracycline, novobiocin, methicillin zones are larger
Alkaline pH of medium Aminoglycosides, erythromycin zones are larger
Incubation in the presence of CO2 Increases zone size of tetracycline and methicillin
Addition of thymidine to medium Decreases activity of trimethoprim
Factors (contd.)

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Maintenance And Use Of Stock Cultures
Selection and origin- strains of maximum characters established
Preservation
1. Long term preservation
- Glycerol at -20C
- Mineral oil at room temperature
-Stab cultures at room temperature
-Stab cultures in cystine trypticase agar (CTA)(for Neisseria and streptococci)
-Cooked-meat medium for anaerobes
2. Short term preservation
- Rapid growing organisms : in TSA slants in screw capped bottles
- Streptococci: in Blood agar slats in screw capped bottles
- Meningococci and Haemophilus: In chocolate agar slants/Plates
- Gonococci: in Chocolate agar

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Diagnostic Antigens and Antisera
 Store at the recommended temperature, avoid repeated freezing and
thawing
 Discard when the manufacturer’s expiry date is reached
 Always include a serum control of known reactivity in each batch
of tests
 Each batch of serological tests should include:
-A negative serum (specificity control);
-A weakly reactive serum (sensitivity control);
-A strongly reactive serum (titration control)

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 EXTERNAL QUALITY ASSURANCE - Quality Assessment
 Laboratory performance is controlled by external professional
agency
 In some countries, participation is mandatory(regulated by
government) and required for licensure
 Involves-
• Periodic monitoring of test quality
• Spot checking of identification tests, and sometimes of isolation
techniques

Santosh Yadav
External Quality Assessment
 Assessment of Quality in a schematic way through an external
agency using material of known but undisclosed results is called
EQA
 Powerful tool that challenges the internal Quality Control measures
that are being adopted by the laboratory

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Objectives of External Quality Assessment
 Monitor laboratory performance and evaluation of quality control
measures
 Establish inter-laboratory comparability
 Influence reliability of future testing
 Promote high standards of good laboratory practices
 Encourage use of standard reagents/ methodology and trained personnel
 Identify common errors
 Provide mechanisms to remedy identified deficiencies
 Education through exercises, reports and meetings

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what is sent
 Cultures(pure or mix)
 Serum (for syphilis, rubella,brucellosis,typhoid
fever,etc)

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INTERNATIONAL STANDARDS ORGANIZATION(ISO)
 International Standards Organization (ISO) is one of the leading
international bodies that has brought together international
community in developing uniform standards for quality in
manufacturing and service sectors

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SUMMARY
 QA = QC +IQA+ EQA
 QC must be practical, achievable and affordable
 QA is important in the diagnosis, treatment, and surveillance
of infectious diseases and policies regarding the selection and use
of antimicrobial drugs
 Trained technical staff and clinical microbiologists are important
resource persons in providing the establishment of essential
microbiology services
 Regular use of Standard operating procedures (SOPs) is essential
to maintain the quality of results in between lab

Quality Assurance in Clinical Microbiology

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