Slims arindam presentaion
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This document discusses the development of a semantic laboratory information management system for stem cell research. It aims to unify public stem cell resources, create a plug-and-play architecture for data access, and enable decision support and agent-oriented modeling and simulations. The system addresses challenges like data incoherence and deluge by mapping databases to ontologies to integrate stem cell data and building an agent-based stem cell model. Its current status involves automatically mapping databases and creating ontologies.
Slims arindam presentaion
- 1. Digital Enterprise Research Institute www.deri.ie A Semantic Laboratory Information Management System for Stem Cell Research Arindam Halder P.I. : Helena F Deus, Frank Barry Copyright 2011 Digital Enterprise Research Institute. All rights reserved. Enabling Networked Knowledge
- 2. Why Stem cells?? Digital Enterprise Research Institute www.deri.ie Enabling Networked Knowledge
- 3. The problems for stem cell researcher Digital Enterprise Research Institute www.deri.ie Enabling Networked Knowledge
- 4. Motivation Digital Enterprise Research Institute www.deri.ie Long ,complex and expensive experiments High failure rates Absence of effective data sharing Lack of credible in-silico modeling and simulation tools. Enabling Networked Knowledge
- 5. Research Hypothesis Digital Enterprise Research Institute www.deri.ie To unify public stem cell resources To create a plug and play architecture for data access To enable decision support system. To enable agent oriented stem cell modeling and simulations. Enabling Networked Knowledge
- 6. Challenges Digital Enterprise Research Institute www.deri.ie Data Incoherence Data deluge Complexity of networks Lack of ‘intelligent’ models Overlapping phenomena representing different processes To build an agent-based stem cell model Enabling Networked Knowledge
- 7. Architecture Digital Enterprise Research Institute www.deri.ie Mediated Ontology+ D2RQ Engine SPARQL Query Rule based Multi Mechanical agent Modelling stimulus 1 + and simulation Enabling Networked Knowledge
- 8. Current Status Digital Enterprise Research Institute www.deri.ie Automation of database mapping and ontology creation Mapping STRING database using D2RQ Concept matching between DB and existing appropriate ontologies. Enabling Networked Knowledge
- 9. Thank You!!!! Digital Enterprise Research Institute www.deri.ie Enabling Networked Knowledge