Yusuke Miyazaki's presentation at PyCon JP 2016 emphasizes the importance and usage of standardized type hints in Python, introduced in version 3.5. It covers the advantages of type hints for enhancing code readability, error detection, and documentation, while also comparing Python's system to those in languages like JavaScript and PHP. The session encourages developers to incorporate type hints in their projects to leverage tools like mypy and PyCharm for better coding practices.