Bioconductor Code: ChIPQC

Graph of ChIPQC

e901de2 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:30:13 -0400;
0aab1b5 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:30:13 -0400;
a673e8a (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:51:17 -0400;
771dee3 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:51:16 -0400;
448ae73 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:35:54 -0400;
b105a43 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:35:54 -0400;
5965ee6 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:58:19 -0400;
850e458 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:58:19 -0400;
109c537 Change Rory email by Rory Stark <[email protected]> 2023-08-25 16:21:03 +0100;
e835440 (origin/RELEASE_3_17, RELEASE_3_17) change Rory email by Rory Stark <[email protected]> 2023-08-25 16:17:44 +0100;
61759e8 resolve merge by Rory Stark <[email protected]> 2023-08-25 16:13:08 +0100;
25510ef bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:31:18 -0400;
a603854 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:31:18 -0400;
0aa2fcd rollup big fixes by Randall Stark <[email protected]> 2023-01-10 13:07:36 +0000;
dabb39a (origin/RELEASE_3_16, RELEASE_3_16) restore fixes from 1.32.2 by Randall Stark <[email protected]> 2023-01-10 12:39:10 +0000;
05faf57 remove RStudio project by Randall Stark <[email protected]> 2022-12-09 16:05:15 +0000;
d7f5692 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:09:28 -0400;
e5968ef bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:09:28 -0400;
6f49921 (origin/RELEASE_3_15, RELEASE_3_15) is.na fix by Randall Stark <[email protected]> 2022-08-08 17:36:30 +0100;
340e8ca bugfix and add BiocParallel as Depend by Randall Stark <[email protected]> 2022-08-02 18:46:02 +0100;
c10f571 bugfix and make BiocParallel a Depends by Randall Stark <[email protected]> 2022-08-02 18:26:34 +0100;
4900a16 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:18:34 +0000;
94963db bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:18:34 +0000;
e7c5e81 plotting fixes by Randall Stark <[email protected]> 2022-03-11 13:38:11 +0000;
e20e832 Pass serialized S4 instances thru updateObject() by Hervé Pagès <[email protected]> 2021-11-20 23:21:44 -0500;
b931009 bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:12:48 +0000;
566bb1a (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:12:48 +0000;
c2f0c81 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:04:03 +0000;
047a9a4 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:04:03 +0000;
f4e27d3 fix man links to DBA (now DBA-object) by Rory Stark <[email protected]> 2021-05-04 15:11:46 +0100;
4b0e0f5 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:55:48 -0400;
967dee8 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:55:48 -0400;
0b035f0 (origin/RELEASE_3_11, RELEASE_3_11) Fix integer overlow in CC calculation by ThomasCarroll <[email protected]> 2020-07-18 12:35:57 -0400;
bd13ca8 Fix integer overflow in CC calculation by ThomasCarroll <[email protected]> 2020-07-18 12:34:52 -0400;
472d6f1 Updates to maintain compatiblity with DiffBind 3.0 by Rory Stark <[email protected]> 2020-07-17 10:41:50 +0100;
5f049fd bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:39:33 +0000;
68a5332 bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:39:33 +0000;
3dcdc30 Update to address build issues by Rory Stark <[email protected]> 2020-03-02 14:00:16 +0000;
3a5768c bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:37:21 -0400;
5f110b0 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:08:54 -0400;
2e509f7 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 12:11:31 -0400;
7534da8 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 11:53:47 -0400;
ea078ba (origin/RELEASE_3_8, RELEASE_3_8) . by Thomas Carroll <[email protected]> 2019-02-28 21:36:46 -0500;
4a26e5c , by Thomas Carroll <[email protected]> 2019-02-28 21:36:10 -0500;
8573a1a Remove peaks near edge of chromosomes by Thomas Carroll <[email protected]> 2019-02-28 21:35:38 -0500;
688b3c7 , by Thomas Carroll <[email protected]> 2019-02-05 15:13:37 -0500;
345cf74 . by Thomas Carroll <[email protected]> 2019-02-05 15:12:54 -0500;
a888df9 Remove use of GNCList by Thomas Carroll <[email protected]> 2019-02-05 15:12:36 -0500;
6c78499 .. by Thomas Carroll <[email protected]> 2019-02-05 15:10:06 -0500;
1e62f83 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:54:32 -0400;
77762fe bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:41:53 -0400;
79ddfdd (origin/RELEASE_3_7, RELEASE_3_7) unlist fix by Thomas Carroll <[email protected]> 2018-09-21 11:38:15 -0400;
2737f7f fix for unlisting by Thomas Carroll <[email protected]> 2018-09-21 10:38:29 -0400;
0e6e715 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:41:40 -0400;
6a31009 bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:35:32 -0400;
44f3693 use granges(x, use.mcols=TRUE) instead of as(x, "GRanges") by Hervé Pagès <[email protected]> 2018-02-12 09:27:14 -0800;
0c1f871 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:53:07 -0400;
8d12b70 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:40:13 -0400;
593674a Fix bug when passing GRanges as consensus in ChIPQC. by Rory Stark <[email protected]> 2017-08-08 17:33:56 +0000;
4e432cd (origin/RELEASE_3_5, RELEASE_3_5) Fix bug when passing GRanges as consensus in ChIPQC. by Rory Stark <[email protected]> 2017-08-08 17:33:45 +0000;
3cbeb3a Fix pruning mode warning by Tom Carroll <[email protected]> 2017-06-15 13:46:44 +0000;
46c0de3 fixes left out of dev by Tom Carroll <[email protected]> 2017-06-12 20:14:39 +0000;
1baf275 use pruning.mode="coarse" instead of force=TRUE when calling seqlevels() setter by Herve Pages <[email protected]> 2017-04-29 20:32:52 +0000;
96be0c6 bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:50:57 +0000;
7ca4cc3 Creating branch for BioC 3.5 release by Herve Pages <[email protected]> 2017-04-24 19:45:44 +0000;
ae83978 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:25:24 +0000;
2105034 (origin/RELEASE_3_4, RELEASE_3_4) Fix for change in ggplot2 by Tom Carroll <[email protected]> 2017-04-03 13:43:32 +0000;
94d37d5 Fixes for dev by Tom Carroll <[email protected]> 2017-03-20 21:02:22 +0000;
66fcefa . by Tom Carroll <[email protected]> 2016-11-22 22:50:30 +0000;
e994a0e fix for ggplot2 str changes by Tom Carroll <[email protected]> 2016-11-21 23:48:37 +0000;
e433909 . by Tom Carroll <[email protected]> 2016-11-17 21:09:45 +0000;
4e5cb11 . by Tom Carroll <[email protected]> 2016-11-16 20:30:58 +0000;
8e8f3a1 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 19:10:43 +0000;
4ebc5ae Creating branch for BioC 3.4 release by Herve Pages <[email protected]> 2016-10-17 19:00:47 +0000;
faa2fa7 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 18:45:06 +0000;
80bd237 (origin/RELEASE_3_3, RELEASE_3_3) bump version by Tom Carroll <[email protected]> 2016-09-27 01:31:59 +0000;
82fbd8f Trying too remove warnings before end of cycle by Tom Carroll <[email protected]> 2016-09-27 01:15:17 +0000;
4d86aa0 Fix to not plot CorHeatmaps when peaks are missing by Tom Carroll <[email protected]> 2016-09-26 18:10:47 +0000;
2c27246 . by Tom Carroll <[email protected]> 2016-09-21 07:58:57 +0000;
1a7306e fix dupp of flagtagcounts by Tom Carroll <[email protected]> 2016-09-13 16:13:11 +0000;
4df02e9 fix to using sample name as lineBy or colourBy parameters by Tom Carroll <[email protected]> 2016-09-12 17:26:37 +0000;
d12784a Fix for facet parameter not being enforced by Tom Carroll <[email protected]> 2016-09-12 17:11:37 +0000;
283fd04 Fixed plotSSD by Tom Carroll <[email protected]> 2016-07-21 14:38:26 +0000;
b9c9bc1 sync with release version by Rory Stark <[email protected]> 2016-06-03 09:47:57 +0000;
cef124e Dependancy cleanu and update handling of how control samples are added by Rory Stark <[email protected]> 2016-05-16 12:14:07 +0000;
aaa9466 . by Tom Carroll <[email protected]> 2016-05-13 13:44:32 +0000;
b74ceb5 Fixes to sampleQC and verbosity config by Tom Carroll <[email protected]> 2016-05-13 13:19:32 +0000;
0c556de bump version after creating 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:30:44 +0000;
6373b48 Creating branch for BioC 3.3 release. by Dan Tenenbaum <[email protected]> 2016-05-03 21:26:31 +0000;
3e02dca Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:20:18 +0000;
d2ec912 Updated data objects to be compatible with DiffBind version by Rory Stark <[email protected]> 2015-11-17 17:22:42 +0000;
114802f (origin/RELEASE_3_2, RELEASE_3_2) fixing old issues by Tom Carroll <[email protected]> 2015-10-15 15:14:18 +0000;
441dbdb Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:59:53 +0000;
1da538c Creating branch for BioC 3.2 release. by Dan Tenenbaum <[email protected]> 2015-10-13 19:57:33 +0000;
086631b Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:36:05 +0000;
7208dcc Only browseURL() if (interactive()) to work around the issue described at https://stat.ethz.ch/pipermail/r-help/2015-August/431411.html by Dan Tenenbaum <[email protected]> 2015-08-18 18:41:25 +0000;
21a9251 Report sample errors when analyzing an experiment. by Rory Stark <[email protected]> 2015-07-07 17:15:52 +0000;
e469d5c (origin/RELEASE_3_1, RELEASE_3_1) Catch sample-specific errors when compiling an experiment. by Rory Stark <[email protected]> 2015-07-07 17:07:59 +0000;
cf59ed0 Bumping version number to get into biocLite repository..at present 1.4.2 not visible by Tom Carroll <[email protected]> 2015-05-12 20:54:27 +0000;
c6c3836 plotSSD manual not attached by Tom Carroll <[email protected]> 2015-05-10 20:07:38 +0000;