% Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/QCfunctions.R
 \name{withinSampleDoublets}
 \alias{withinSampleDoublets}

 \title{withinSampleDoublets}

 \usage{
 withinSampleDoublets(sce, altExp_name = NULL, eps = 200, minPts = 50)
 }
 \arguments{
 \item{sce}{a SingleCellExperiment}
 
 \item{altExp_name}{expression name of HTO matrix}
 
 \item{eps}{eps of DBSCAN}
 
 \item{minPts}{minPts of DBSCAN}
 }

 \value{
 A SingleCellExperiment object
 }

 \description{
 doublet identification within batch
 }

 \examples{
 

 data(CITEseq_example, package = "CiteFuse")

 sce_citeseq <- preprocessing(CITEseq_example)
 sce_citeseq <- normaliseExprs(sce = sce_citeseq,
 altExp_name = "HTO",
 transform = "log")
 sce_citeseq <- crossSampleDoublets(sce_citeseq)
 sce_citeseq <- withinSampleDoublets(sce_citeseq,
 minPts = 10)
 
 }