| ... | ... |
@@ -436,7 +436,7 @@ plot.cnv = TRUE, max.segments = NULL, min.logr.sdev = 0.15, chr.hash = chr.hash) |
| 436 | 436 |
} |
| 437 | 437 |
|
| 438 | 438 |
.getAverageWeightPV <- function(seg, weights, perm = 2000) {
|
| 439 |
- perm <- min(length(weights), 2000) |
|
| 439 |
+ perm <- min(length(weights), perm) |
|
| 440 | 440 |
num_marks <- sort(unique(seg$num.mark)) |
| 441 | 441 |
.do_permutation <- function(i, l) {
|
| 442 | 442 |
if (l > 25) return(0) |
