Bioconductor Code: PureCN

Graph of PureCN

d2327b2 (origin/RELEASE_3_21, RELEASE_3_21) Merge bugfixes from devel branch. by Markus Riester <[email protected]> 2025-04-25 14:55:15 -0400;
8b2629d (HEAD -> devel, origin/devel, origin/HEAD) Version bump by Markus Riester <[email protected]> 2025-04-23 13:42:03 -0400;
171b040 Merge pull request <a href="#388">#388</a> from DIncalciLab/subset-normal-coverage-with-log2r by Markus Riester <[email protected]> 2025-04-22 16:56:33 -0400;
3150736 If log ratios are provided, subset also the normals if available by Luca Beltrame <[email protected]> 2025-04-22 10:42:36 +0200;
dfaa231 Avoid warning when restoring par('mar') by Markus Riester <[email protected]> 2025-04-21 15:13:25 -0400;
7000e80 Fixing quantile probs argument (closes #387). by Markus Riester <[email protected]> 2025-04-17 17:44:45 -0400;
a82c794 Version bump in README. by Markus Riester <[email protected]> 2025-04-16 10:55:14 -0400;
ce004f7 bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:01:28 -0400;
4b0acdb bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:01:28 -0400;
956277b Another attempt in fixing build errors. by Markus Riester <[email protected]> 2025-03-30 15:05:57 -0400;
7101598 Attempt in fixing build errors. by Markus Riester <[email protected]> 2025-03-30 14:34:28 -0400;
7ed7c90 Merge branch 'devel' of https://github.com/lima1/PureCN into devel by Markus Riester <[email protected]> 2025-03-28 14:31:40 -0400;
f117e06 Version bump. by Markus Riester <[email protected]> 2025-03-28 14:31:08 -0400;
55905e7 Merge pull request <a href="#384">#384</a> from lima1/issue_342 by Markus Riester <[email protected]> 2025-03-28 14:27:48 -0400;
69f0492 Merge branch 'devel' into issue_342 by Markus Riester <[email protected]> 2025-03-28 14:23:32 -0400;
bc70644 Merge branch 'devel' into issue_342 by Markus Riester <[email protected]> 2025-03-28 13:53:58 -0400;
88754b2 Version bump by Markus Riester <[email protected]> 2025-03-20 12:07:34 -0400;
93a9a9c Merge pull request <a href="#382">#382</a> from Caris-Life-Sciences/fix-bai-option-coverage-r-272 by Markus Riester <[email protected]> 2025-03-14 21:35:39 -0400;
f8b1a27 use --bai option value when a single bam file is provided as input by Noah Spies <[email protected]> 2025-03-15 01:26:16 +0000;
5082af0 Version bump. by Markus Riester <[email protected]> 2025-01-16 14:47:51 -0500;
b7f8fd8 Merge pull request <a href="#379">#379</a> from lima1/issue_378 by Markus Riester <[email protected]> 2025-01-10 10:53:49 -0500;
ffd5815 Version update in README. by Markus Riester <[email protected]> 2025-01-03 18:47:07 -0500;
7f40f7c Potential fix for #378. by Markus Riester <[email protected]> 2024-12-11 12:04:12 -0500;
2394ee7 Version bump in README. by Markus Riester <[email protected]> 2024-11-17 13:47:24 -0500;
2bea853 Fix conflict. by Markus Riester <[email protected]> 2024-11-17 13:46:25 -0500;
cb8d0f6 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:10:26 -0400;
7a189a9 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:10:26 -0400;
f14ac86 Merge branch 'devel' into issue_342 by Markus Riester <[email protected]> 2024-09-13 10:36:22 -0400;
59dad0e Merge branch 'devel' of https://github.com/lima1/PureCN into devel by Markus Riester <[email protected]> 2024-09-13 10:33:59 -0400;
0810ee5 +findHighQualitySNPs by Markus Riester <[email protected]> 2024-09-13 10:33:31 -0400;
9080c51 Merge branch 'devel' of https://github.com/lima1/PureCN into devel by Markus Riester <[email protected]> 2024-05-12 10:03:06 -0400;
7905ce8 Updated Dockerfile by Markus Riester <[email protected]> 2024-05-12 10:02:49 -0400;
476f205 Added --num-eigen-vectors to PureCN.R by Markus Riester <[email protected]> 2024-05-10 17:47:04 -0400;
ff97623 version bump in README. by Markus Riester <[email protected]> 2024-05-10 10:26:38 -0400;
8829f97 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:50:39 -0400;
7048a48 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:50:39 -0400;
e2de636 Version bump. by Markus Riester <[email protected]> 2024-04-24 15:17:15 -0400;
0edcd4d Merge pull request <a href="#366">#366</a> from lima1/issue_40 by Markus Riester <[email protected]> 2024-04-24 15:15:01 -0400;
354413c Merge pull request <a href="#365">#365</a> from lima1/issue_363 by Markus Riester <[email protected]> 2024-04-24 15:13:23 -0400;
37f0097 Attempt in fixing #363. by Markus Riester <[email protected]> 2024-04-24 14:47:05 -0400;
822e4df Attempt in fixing #363. by Markus Riester <[email protected]> 2024-04-24 14:43:56 -0400;
5ec2226 Changed default of min.ratio to cleaner -8. by Markus Riester <[email protected]> 2024-04-01 11:39:12 -0400;
daf175b Fix broken test. by Markus Riester <[email protected]> 2024-03-31 17:02:36 -0400;
5169999 Attempt in a resolution for #40. by Markus Riester <[email protected]> 2024-03-31 16:38:37 -0400;
e8ea7b3 version bump. by Markus Riester <[email protected]> 2024-03-28 17:58:37 -0400;
82fbc2e Merge pull request <a href="#359">#359</a> from lima1/issue_356 by Markus Riester <[email protected]> 2024-03-28 17:57:20 -0400;
bb3203d Attempt in fixing #356. by Markus Riester <[email protected]> 2024-03-28 14:56:40 -0400;
f1530d5 Keep allosome log ratio. by Markus Riester <[email protected]> 2024-03-28 14:50:25 -0400;
c7fddf0 Fix for test failure. by Markus Riester <[email protected]> 2024-01-12 13:11:24 -0500;
a517932 Conda version bump. by Markus Riester <[email protected]> 2023-12-11 18:13:02 -0500;
2d14295 Version bump. by Markus Riester <[email protected]> 2023-12-11 18:11:55 -0500;
324e626 Merge pull request <a href="#337">#337</a> from tinyheero/rm-condition-statement-segmentationpscbs by Markus Riester <[email protected]> 2023-12-11 18:10:03 -0500;
d0431dd Remove superfluous condition statement by chanf10_roche <[email protected]> 2023-12-11 14:57:45 -0800;
b199fb0 Updated department name. by Markus Riester <[email protected]> 2023-12-11 16:11:51 -0500;
d0dcc83 Dockerfile updates. by Markus Riester <[email protected]> 2023-12-10 16:42:36 -0500;
ddf99ff Updated NEWS. by Markus Riester <[email protected]> 2023-12-07 14:01:14 -0500;
a41f054 Merge pull request <a href="#325">#325</a> from ddrichel/issue_321 by Markus Riester <[email protected]> 2023-12-07 13:47:49 -0500;
6328404 Version bump. by Markus Riester <[email protected]> 2023-12-07 13:13:16 -0500;
9be1f2e Merge pull request <a href="#335">#335</a> from tinyheero/retain-exon-lrs by Markus Riester <[email protected]> 2023-12-07 13:09:14 -0500;
576f726 Rename to interval.lrs by chanf10_roche <[email protected]> 2023-12-07 08:41:41 -0800;
f6ab912 Remove extra exon.lrs by chanf10_roche <[email protected]> 2023-12-06 11:18:37 -0800;
e807dfc Retain exon.lrs by chanf10_roche <[email protected]> 2023-12-06 11:17:17 -0800;
c90836b Update by chanf10_roche <[email protected]> 2023-12-04 13:25:57 -0800;
43f6a49 (origin/RELEASE_3_18, RELEASE_3_18) Version bump. by Markus Riester <[email protected]> 2023-11-20 16:23:17 -0500;
3ecaac1 Attempt in making current developer version of GenomicsDB-R work. by Markus Riester <[email protected]> 2023-06-12 13:58:51 -0400;
d3a8181 version bump. by Markus Riester <[email protected]> 2023-11-20 16:17:17 -0500;
5e8b665 Merge pull request <a href="#333">#333</a> from lima1/issue_296 by Markus Riester <[email protected]> 2023-11-20 16:12:09 -0500;
8f86693 Updated Dockerfile. by Markus Riester <[email protected]> 2023-11-20 13:59:57 -0500;
ea71a34 Updated Dockerfile. by Markus Riester <[email protected]> 2023-11-18 12:57:28 -0500;
a0abe54 Updated new stable version number. by Markus Riester <[email protected]> 2023-11-17 08:22:07 -0500;
5b3dfca bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:49:53 -0400;
82372ec bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:49:53 -0400;
144f3e6 Version bump. by Markus Riester <[email protected]> 2023-09-23 20:16:51 -0400;
e1e1b2a Merge pull request <a href="#326">#326</a> from lima1/issue_320 by Markus Riester <[email protected]> 2023-09-23 19:38:46 -0400;
3a7751b Added documentation for #320. by Markus Riester <[email protected]> 2023-09-23 18:20:04 -0400;
1bc83a4 Updated documentation and comments: --max-allele-counts, dbSNP membership, COSMIC counts by Dmitriy Drichel <[email protected]> 2023-09-15 12:12:50 +0200;
43edf33 Make min.base.quality accessible in PureCN.R, throw warning when many variants are removed (#320). by Markus Riester <[email protected]> 2023-09-06 17:59:38 -0400;
df67480 Merge branch 'devel' of https://github.com/lima1/PureCN into devel by Markus Riester <[email protected]> 2023-07-18 11:29:48 -0400;
c2fe7d0 Conda version bump. by Markus Riester <[email protected]> 2023-07-18 11:29:16 -0400;
9730ca0 Updated Dockerfile. by Markus Riester <[email protected]> 2023-07-15 11:54:49 -0400;
d90f3f0 Version bump by Markus Riester <[email protected]> 2023-07-05 12:57:51 -0400;
b07869d Merge pull request <a href="#305">#305</a> from lima1/issue_301 by Markus Riester <[email protected]> 2023-07-05 12:56:34 -0400;
098a7a2 Version bump. by Markus Riester <[email protected]> 2023-07-03 13:24:55 -0400;
5cc48c7 Merge pull request <a href="#304">#304</a> from lima1/issue_302 by Markus Riester <[email protected]> 2023-07-03 13:19:15 -0400;
4e54665 Ignore DB flag if it only contains NAs (#301). by Markus Riester <[email protected]> 2023-07-03 13:14:01 -0400;
9fd3c5f Fix wrongly formatted error message (#302). by Markus Riester <[email protected]> 2023-07-03 12:31:23 -0400;
1e8c653 Version bump. by Markus Riester <[email protected]> 2023-06-26 13:07:03 -0400;
a2a5371 Merge pull request <a href="#299">#299</a> from lima1/issue_298 by Markus Riester <[email protected]> 2023-06-26 13:04:58 -0400;
9c55710 Attempt in fixing #P298. by Markus Riester <[email protected]> 2023-06-23 15:26:26 -0400;
78a751b Version bump. by Markus Riester <[email protected]> 2023-06-20 11:05:47 -0400;
efeb6db (origin/RELEASE_3_17, RELEASE_3_17) Version bump. by Markus Riester <[email protected]> 2023-06-20 11:03:31 -0400;
2173281 Potential simple fix for #260. by Markus Riester <[email protected]> 2023-06-14 13:58:51 -0400;
dc5322a Merge pull request <a href="#297">#297</a> from lima1/issue_260 by Markus Riester <[email protected]> 2023-06-20 08:47:07 -0400;
1914361 Potential simple fix for #260. by Markus Riester <[email protected]> 2023-06-14 13:58:51 -0400;
73ba604 More tweaks to Dockerfile. by Markus Riester <[email protected]> 2023-06-13 18:02:53 -0400;
950dd19 Updated Dockerfile by Markus Riester <[email protected]> 2023-06-12 19:22:38 -0400;
eb6b871 version bump. by Markus Riester <[email protected]> 2023-06-12 18:09:00 -0400;
c67a8de Backport of GenomicsDB-R developer fix. by Markus Riester <[email protected]> 2023-06-12 14:42:32 -0400;
879f431 Attempt in making current developer version of GenomicsDB-R work. by Markus Riester <[email protected]> 2023-06-12 13:58:51 -0400;
b8d2bc4 Attempt in making current developer version of GenomicsDB-R work. by Markus Riester <[email protected]> 2023-06-12 13:58:51 -0400;