Fix wrongly formatted error message (#302).
Markus Riester authored on 03/07/2023 17:19:15
• GitHub committed on 03/07/2023 17:19:15
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@@ -512,8 +512,8 @@ function(vcf, tumor.id.in.vcf, allowed = 0.05) {
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| 512 | 512 |
db <- grepl("^rs", rownames(vcf))
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| 513 | 513 |
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| 514 | 514 |
if (!sum(db)) {
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- .stopUserError("vcf.file has no %s or %s info field for membership in germline databases.",
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- DB.info.flag, POPAF.info.field) |
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+ .stopUserError("vcf.file has no ", DB.info.flag, " or ", POPAF.info.field,
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+ " info field for membership in germline databases.") |
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| 517 | 517 |
} else {
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| 518 | 518 |
flog.warn("vcf.file has no %s or %s info field for membership in germline databases.%s",
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| 519 | 519 |
DB.info.flag, POPAF.info.field, " Guessing it based on available dbSNP ID.") |