Bioconductor Code: RAIDS

Graph of RAIDS

cf24404 (origin/RELEASE_3_21, RELEASE_3_21) version bump in release by belleau <[email protected]> 2025-04-15 22:57:27 -0400;
1489dba Merge remote-tracking branch 'origin/main' into RELEASE_3_21 by belleau <[email protected]> 2025-04-15 22:54:53 -0400;
c0dfd0f (HEAD -> devel, origin/devel, origin/HEAD) Merge remote-tracking branch 'origin/main' by belleau <[email protected]> 2025-04-15 22:44:24 -0400;
12305bb Update version by belleau <[email protected]> 2025-04-15 22:42:57 -0400;
c843799 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-15 22:40:02 -0400;
d17c99b Merge pull request <a href="#589">#589</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-15 22:29:51 -0400;
5e34f05 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-15 21:55:53 -0400;
3ab308b Tuning the functions for Rsamtools part 3 by belleau <[email protected]> 2025-04-15 21:55:15 -0400;
b4f6d1f Update RAIDS.Rmd by Pascal Belleau <[email protected]> 2025-04-15 21:45:50 -0400;
575bee9 Update RAIDS.Rmd by krasnitz <[email protected]> 2025-04-15 18:27:53 -0400;
6fbfb87 Update RAIDS.Rmd by krasnitz <[email protected]> 2025-04-15 17:34:48 -0400;
b48574a Update RAIDS.Rmd by krasnitz <[email protected]> 2025-04-15 17:18:09 -0400;
dc80748 Update RAIDS.Rmd by krasnitz <[email protected]> 2025-04-15 16:24:08 -0400;
b3b3d8c bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 13:22:03 -0400;
ed557dd bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 13:22:03 -0400;
db5a712 Merge pull request <a href="#587">#587</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-14 20:46:53 -0400;
02fd410 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-14 19:15:51 -0400;
2eb8e60 Tuning the functions for Rsamtools part 2 by belleau <[email protected]> 2025-04-14 19:15:39 -0400;
2274812 Merge pull request <a href="#585">#585</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-14 14:58:28 -0400;
ede1f3f Merge pull request <a href="#586">#586</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-14 14:58:17 -0400;
db68d0e Merge branch 'main' of https://github.com/adeschen/RAIDS by adeschen <[email protected]> 2025-04-14 13:56:46 -0400;
643a443 Update vignette by adeschen <[email protected]> 2025-04-14 13:56:36 -0400;
2c88c53 Merge pull request <a href="#584">#584</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-14 13:53:49 -0400;
a130c66 Update vignette by adeschen <[email protected]> 2025-04-14 13:29:12 -0400;
3dcb3fe Merge pull request <a href="#583">#583</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-14 13:28:54 -0400;
f0747f0 Update vignette step 1 by adeschen <[email protected]> 2025-04-14 13:10:04 -0400;
3623eb5 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-13 14:49:52 -0400;
9969cfc Add function createProfile and adapted the rest by belleau <[email protected]> 2025-04-13 14:49:33 -0400;
601e9a5 Merge pull request <a href="#581">#581</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-11 18:07:42 -0400;
8656930 Merge pull request <a href="#582">#582</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-11 18:04:43 -0400;
3c005df Update RAIDS.Rmd by krasnitz <[email protected]> 2025-04-11 17:35:13 -0400;
f9c7db5 Update to version 1.5.1 by belleau <[email protected]> 2025-04-11 17:14:42 -0400;
adf231f Merge remote-tracking branch 'upstream/devel' by belleau <[email protected]> 2025-04-11 16:58:39 -0400;
1f22615 Merge branch 'main' of https://github.com/KrasnitzLab/RAIDS by belleau <[email protected]> 2025-04-11 16:50:41 -0400;
2d91898 Update example in doc for processPileupChrBin() function by adeschen <[email protected]> 2025-04-11 16:47:56 -0400;
7391a7e Merge pull request <a href="#580">#580</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-11 16:24:37 -0400;
f91aa80 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-11 16:07:54 -0400;
dd2ee04 Add function generateProfileGDS by belleau <[email protected]> 2025-04-11 16:07:00 -0400;
fb60b8f Merge pull request <a href="#579">#579</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-11 15:49:26 -0400;
b698dd3 Merge branch 'main' of https://github.com/adeschen/RAIDS by adeschen <[email protected]> 2025-04-11 14:26:43 -0400;
26c72ca Add unit test for processPileupChrBin() function by adeschen <[email protected]> 2025-04-11 14:26:34 -0400;
e2ac16f Merge pull request <a href="#5">#5</a> from KrasnitzLab/main by Astrid Deschênes <[email protected]> 2025-04-11 13:49:22 -0400;
64aa87a Merge pull request <a href="#578">#578</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-11 13:48:03 -0400;
5b04cad Update RAIDS.Rmd by krasnitz <[email protected]> 2025-04-11 13:33:30 -0400;
8cc8b65 Update doc and format processPileupChrBin() function by adeschen <[email protected]> 2025-04-11 13:28:56 -0400;
5b03a90 Merge pull request <a href="#577">#577</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-11 12:58:31 -0400;
4e774b0 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-11 12:43:27 -0400;
30c5997 Add function readSNVBAM by belleau <[email protected]> 2025-04-11 12:43:17 -0400;
70620b9 Merge pull request <a href="#576">#576</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-11 12:29:01 -0400;
bf8e02b Adding tests for extractNucleotide() function by adeschen <[email protected]> 2025-04-10 15:31:38 -0400;
ec7902a Merge pull request <a href="#575">#575</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-10 15:08:39 -0400;
34eb2fe Correct extractNucleotide() function by adeschen <[email protected]> 2025-04-10 14:37:57 -0400;
b2d024a Update doc for extractNucleotid() function by adeschen <[email protected]> 2025-04-10 14:03:40 -0400;
204f21e Merge pull request <a href="#4">#4</a> from KrasnitzLab/main by Astrid Deschênes <[email protected]> 2025-04-10 13:35:46 -0400;
5145ad9 Merge pull request <a href="#574">#574</a> from belleau/main by Astrid Deschênes <[email protected]> 2025-04-10 12:24:32 -0400;
a5a1bf8 Merge pull request <a href="#573">#573</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-10 12:11:58 -0400;
5da36d0 Merge branch 'main' of https://github.com/adeschen/RAIDS by adeschen <[email protected]> 2025-04-10 11:55:35 -0400;
f2ae83d Update README by adeschen <[email protected]> 2025-04-10 11:53:26 -0400;
c47f0e4 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2025-04-10 09:01:34 -0400;
33e0327 Add function extractNucleotide and processPileupChrBin by belleau <[email protected]> 2025-04-10 08:59:31 -0400;
ba92d06 Merge pull request <a href="#572">#572</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-09 21:09:40 -0400;
d7bdaea Update check-bioc by adeschen <[email protected]> 2025-04-09 20:40:52 -0400;
cf9bc69 Merge pull request <a href="#571">#571</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-09 19:58:20 -0400;
00c1ba2 Update vignette title by adeschen <[email protected]> 2025-04-09 19:33:41 -0400;
ce9c260 Merge pull request <a href="#570">#570</a> from adeschen/main by Astrid Deschênes <[email protected]> 2025-04-09 19:27:06 -0400;
7ba504a Update title in DESCRIPTION file by adeschen <[email protected]> 2025-04-09 18:13:44 -0400;
bb243c9 bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:24:12 -0400;
6b32a2c (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:24:12 -0400;
2c598a2 Merge remote-tracking branch 'origin/main' by belleau <[email protected]> 2024-10-22 16:22:39 -0400;
fca2f9f Merge pull request <a href="#569">#569</a> from belleau/main by Astrid Deschênes <[email protected]> 2024-10-22 16:11:41 -0400;
46e8309 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2024-10-22 16:01:00 -0400;
1199983 Increase version by belleau <[email protected]> 2024-10-22 16:00:51 -0400;
9b64817 Merge pull request <a href="#568">#568</a> from belleau/main by Astrid Deschênes <[email protected]> 2024-10-22 15:33:58 -0400;
87b9718 Merge branch 'KrasnitzLab:main' into main by Pascal Belleau <[email protected]> 2024-10-22 15:08:17 -0400;
8f2ea94 Merge pull request <a href="#567">#567</a> from adeschen/main by Astrid Deschênes <[email protected]> 2024-10-21 23:19:02 -0400;
5025818 Update vignette by Astrid Deschenes <[email protected]> 2024-10-21 20:54:03 -0400;
388d94d Update function documentation and correct indents by Astrid Deschenes <[email protected]> 2024-10-21 20:38:25 -0400;
081e2da Merge pull request <a href="#566">#566</a> from adeschen/main by Astrid Deschênes <[email protected]> 2024-10-21 19:06:01 -0400;
4d63292 Update vignette by Astrid Deschenes <[email protected]> 2024-10-21 18:36:39 -0400;
c781997 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2024-10-18 10:50:22 -0400;
6c36cd5 Add a validation to addBlockFromDetFile. by belleau <[email protected]> 2024-10-18 10:48:27 -0400;
54b64ca Merge pull request <a href="#565">#565</a> from belleau/main by Astrid Deschênes <[email protected]> 2024-10-16 17:16:31 -0400;
7602b79 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2024-10-16 12:01:30 -0400;
bdbca27 Correct example for addGDS1KGLDBlock by belleau <[email protected]> 2024-10-16 12:01:19 -0400;
6667021 Update Description by belleau <[email protected]> 2024-10-16 11:26:03 -0400;
7bceec5 Merge pull request <a href="#564">#564</a> from belleau/main by Astrid Deschênes <[email protected]> 2024-10-16 11:01:02 -0400;
6c88638 Correct example for addGDS1KGLDBlock by belleau <[email protected]> 2024-10-16 10:58:10 -0400;
841e6a9 Merge branch 'main' of https://github.com/belleau/RAIDS by belleau <[email protected]> 2024-10-16 10:54:23 -0400;
18056f2 Update to parse the plink output for LD blocks. by belleau <[email protected]> 2024-10-16 10:47:30 -0400;
6bbb29a Merge pull request <a href="#563">#563</a> from adeschen/main by Astrid Deschênes <[email protected]> 2024-10-16 10:24:58 -0400;
bc8ec34 Update main vignette by Astrid Deschenes <[email protected]> 2024-10-16 10:14:56 -0400;
b4a3551 Merge pull request <a href="#562">#562</a> from adeschen/main by Astrid Deschênes <[email protected]> 2024-10-16 02:28:13 -0400;
e93f536 Merge branch 'main' of https://github.com/adeschen/RAIDS by Astrid Deschenes <[email protected]> 2024-10-16 00:42:34 -0400;
4762a5b Update main vignette by Astrid Deschenes <[email protected]> 2024-10-16 00:42:24 -0400;
5aeea96 Merge pull request <a href="#561">#561</a> from adeschen/main by Astrid Deschênes <[email protected]> 2024-10-16 00:42:02 -0400;
4008f4f Merge branch 'KrasnitzLab:main' into main by Astrid Deschênes <[email protected]> 2024-10-16 00:20:52 -0400;
6256b60 Merge pull request <a href="#560">#560</a> from adeschen/main by Astrid Deschênes <[email protected]> 2024-10-15 23:54:38 -0400;
d3a2b96 Merge branch 'main' of https://github.com/adeschen/RAIDS by Astrid Deschenes <[email protected]> 2024-10-15 23:54:29 -0400;
31cae4f Remove old image for main steps section by Astrid Deschenes <[email protected]> 2024-10-15 23:54:20 -0400;
e92a07a Merge branch 'KrasnitzLab:main' into main by Astrid Deschênes <[email protected]> 2024-10-15 23:08:00 -0400;