import(methods)
 import(utils)
 
 importFrom(igraph, graph.data.frame, get.data.frame, layout.kamada.kawai,
                    plot.igraph, igraph.to.graphNEL)
 
 
 import(BiocGenerics)

 import(S4Vectors)

 import(IRanges)

 import(GenomeInfoDb)

 import(GenomicRanges)

 import(GenomicFeatures)

 importFrom(Rsamtools, asBam)

 import(GenomicAlignments)

 importFrom(graph, nodeDataDefaults, nodeData,

                   edgeDataDefaults, edgeNames, edgeData, edgemode)

 importFrom(Rgraphviz, agopen, buildEdgeList, buildNodeList, from, to)

 exportClasses(GeneModel, SplicingGraphs)

 
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 ### Export S4 methods for generics not defined in SplicingGraphs
 ###
 
 exportMethods(

     length,
     names,

     show,

     "[",
     "[[",
     elementLengths,
     unlist,

     seqnames,
     strand,

     seqinfo,

     intronsByTranscript,

     plot

 )
 
 
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

 ### Export non-generic functions (and non-function symbols)

 ###
 
 export(
     ## sgraph-methods.R:

     slideshow,

     ## rsgedgesByGene-methods.R:
     rsgedges, sgedges2,
     rsgraph, sgraph2,
 

     ## bubbles-methods.R:
     ASCODE2DESC,
 

     ## assignReads.R:

     assignReads,

     removeReads,

 
     ## toy_data.R:
     toy_genes_gff,
     toy_reads_sam,
     toy_reads_bam,

     toy_overlaps

 )
 
 
 ### - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
 ### Export S4 generics defined in SplicingGraphs + export corresponding
 ### methods
 ###
 

 export(

     ## SplicingGraphs-class.R:
     SplicingGraphs,
 

     ## plotTranscripts-methods.R:
     plotTranscripts,
 

     ## sgedgesByGene-methods.R:

     sgedgesByTranscript,

     sgedgesByGene,

     ## txpath-methods.R:
     txpath,

     txweight, "txweight<-",

 
     ## sgedges-methods.R:

     sgedges,

     sgnodes,

     outdeg, indeg,

 
     ## sgraph-methods.R:

     sgraph,
 

     ## rsgedgesByGene-methods.R:

     uninformativeSSids,

     rsgedgesByTranscript,

     rsgedgesByGene,

 
     ## bubbles-methods.R:
     bubbles,

     ## countReads-methods.R:

     reportReads,

     countReads

 )
 

 ### Exactly the same list as above.

 exportMethods(

     SplicingGraphs,

     plotTranscripts,

     sgedgesByTranscript,

     sgedgesByGene,

     txpath,

     txweight, "txweight<-",

     sgedges,

     sgnodes,

     outdeg, indeg,

     sgraph,

     uninformativeSSids,

     rsgedgesByTranscript,

     rsgedgesByGene,

     bubbles,

     reportReads,

     countReads

 )