May 18, 2015
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add AlternativeSplicing and Transcription to biocViews field

Herve Pages authored on 18/05/2015 19:55:41
April 16, 2015
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Creating branch for BioC 3.1 release.

Dan Tenenbaum authored on 16/04/2015 20:00:01
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Bump versions prior to creating 3.1 branch.

Dan Tenenbaum authored on 16/04/2015 19:42:01
February 25, 2015
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oops, an occurence of my old email address was left behind

Herve Pages authored on 25/02/2015 23:11:25
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Update Fred Hutch email address to new official domain (fredhutch.org instead of fhcrc.org)

Herve Pages authored on 25/02/2015 22:43:24
January 7, 2015
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Rsamtools is now required instead of suggested only

Herve Pages authored on 07/01/2015 20:07:56
January 6, 2015
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add a few missing imports

Herve Pages authored on 06/01/2015 07:58:11
View 95b4fa0

fix some broken links

Herve Pages authored on 06/01/2015 07:13:31
View 01f0896

Explicitely sort the hits returned by findOverlaps() (they are not returned fully sorted anymore now that findOverlaps() is based on the NCList algo).

Herve Pages authored on 06/01/2015 07:02:14
December 14, 2014
View d0a3750

Rsamtools isNotPrimaryRead re-named isSecondaryAlignment

Martin Morgan authored on 14/12/2014 20:58:28
October 20, 2014
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tweak to accomodate addition of all.equal.environment() to R 3.2

Herve Pages authored on 20/10/2014 20:53:34
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follow renaming of makeTranscriptDb*() functions to makeTxDb*()

Herve Pages authored on 20/10/2014 18:55:58
October 13, 2014
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Bumping versions after creating 3.0 release branch.

Dan Tenenbaum authored on 13/10/2014 21:47:41
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Bump package versions prior to creating the 3.0 branch.

Dan Tenenbaum authored on 13/10/2014 21:38:33
October 2, 2014
View 7b7a635

update pre-computed results used in vignette

Herve Pages authored on 02/10/2014 21:50:20