\name{bubbles-methods} \alias{bubbles-methods} \alias{bubbles} \alias{bubbles,SplicingGraphs-method} \alias{bubbles,ANY-method} \alias{bubbles,IntegerList-method} \alias{ASCODE2DESC} \title{ Compute the bubbles of a splicing graph } \description{ \code{bubbles} computes the bubbles of the splicing graph of a given gene from a \link{SplicingGraphs} object. } \usage{ bubbles(x) ASCODE2DESC } \arguments{ \item{x}{ A \link{SplicingGraphs} object of length 1. } } \details{ TODO } \value{ TODO } \author{ H. Pages } \seealso{ This man page is part of the \pkg{SplicingGraphs} package. Please see \code{?`\link{SplicingGraphs-package}`} for an overview of the package and for an index of its man pages. } \examples{ example(SplicingGraphs) # create SplicingGraphs object 'sg' sg ## 'sg' has 1 element per gene and 'names(sg)' gives the gene ids. names(sg) plot(sgraph(sg["geneA"], tx_id.as.edge.label=TRUE)) bubbles(sg["geneA"]) plot(sgraph(sg["geneB"], tx_id.as.edge.label=TRUE)) bubbles(sg["geneB"]) plot(sgraph(sg["geneD"], tx_id.as.edge.label=TRUE)) bubbles(sg["geneD"]) }