1. SplicingGraphs
  2. Graph
Graph of SplicingGraphs
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  • 15a7907 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:24:06 -0400;
  • 49da932 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:24:06 -0400;
  • 2e358aa (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:45:56 -0400;
  • fbd614a (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:45:56 -0400;
  • d44efd6 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:31:50 -0400;
  • f431360 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:31:50 -0400;
  • 92376aa Add new txdbmaker package to Suggests by Hervé Pagès <[email protected]> 2024-03-18 10:15:15 -0700;
  • 4ff1265 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:53:57 -0400;
  • ed0e2f6 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:53:57 -0400;
  • a2a48df bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:27:02 -0400;
  • f5cc79e (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:27:02 -0400;
  • 6078cfa Repair internal utility make_Ragraph_from_igraph() by Hervé Pagès <[email protected]> 2023-04-13 19:02:42 -0700;
  • e628343 version bump (just for testing) by Hervé Pagès <[email protected]> 2023-04-13 13:21:28 -0700;
  • 547459a bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:08:13 -0400;
  • 37dc46c (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:08:13 -0400;
  • 0649ed3 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:14:47 +0000;
  • 7151ba0 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:14:47 +0000;
  • f75a66e bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:08:01 +0000;
  • 25cc726 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:08:01 +0000;
  • 6f313b4 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 15:58:48 +0000;
  • 6066f74 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 15:58:48 +0000;
  • 5a2e94d package name in bold by Hervé Pagès <[email protected]> 2021-04-22 22:31:32 -0700;
  • bf9dd7a Use enhanced base::sequence() instead of S4Vectors:::fancy_mseq() by Hervé Pagès <[email protected]> 2020-11-02 21:28:26 -0800;
  • 384acf3 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:50:40 -0400;
  • b093fb0 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:50:40 -0400;
  • 99a9bfa Add URL and BugReports info to DESCRIPTION file by Hervé Pagès <[email protected]> 2020-10-27 04:08:57 -0700;
  • b1bd118 update one more occurence of previous email address by Hervé Pagès <[email protected]> 2020-10-07 12:15:21 -0700;
  • b6863d5 update email address by Hervé Pagès <[email protected]> 2020-10-07 11:18:27 -0700;
  • da7fb2b bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:34:27 +0000;
  • b8e7d74 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:34:27 +0000;
  • 42f49b4 (origin/RELEASE_3_10, RELEASE_3_10) Add updateObject() method for SplicingGraphs objects by Hervé Pagès <[email protected]> 2019-11-19 21:45:12 -0800;
  • 8aa1a42 Add updateObject() method for SplicingGraphs objects by Hervé Pagès <[email protected]> 2019-11-19 21:45:12 -0800;
  • 8450238 bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:36:51 -0400;
  • 4af88bb bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:08:40 -0400;
  • a7265a1 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 12:11:22 -0400;
  • d533e82 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 11:53:42 -0400;
  • b8e618c Add README.md file by Hervé Pagès <[email protected]> 2019-04-19 13:47:10 -0700;
  • 4d72c72 Remove empty line at end of SAM file by Hervé Pagès <[email protected]> 2019-03-04 10:39:51 -0800;
  • df10695 (origin/RELEASE_3_8, RELEASE_3_8) Use gene 7597 instead of 100309464 in vignette by Hervé Pagès <[email protected]> 2019-01-28 17:53:53 -0800;
  • 7041582 Use gene 7597 instead of 100309464 in vignette by Hervé Pagès <[email protected]> 2019-01-28 17:53:53 -0800;
  • f55da00 Add ImmunoOncology term to biocViews field by Hervé Pagès <[email protected]> 2018-12-05 11:56:34 -0800;
  • 3274c0b Add ImmunoOncology term to biocViews field by Hervé Pagès <[email protected]> 2018-12-05 11:56:34 -0800;
  • a119c8a bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:54:31 -0400;
  • 60e70d3 bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:41:51 -0400;
  • 223dc8d bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:41:39 -0400;
  • b8a1cc8 (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:35:30 -0400;
  • 95ce01f Fix various issues by Hervé Pagès <[email protected]> 2018-04-26 00:21:39 -0700;
  • d25d485 Starting with 0.17.5, endoapply() on a DataFrame object works properly when applying a function that modifies the nb of rows. by Hervé Pagès <[email protected]> 2017-11-17 04:17:50 -0800;
  • e980002 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:52:49 -0400;
  • 8e42e38 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:40:02 -0400;
  • dd1cf62 2 previous commits were for testing purpose only. Restoring original version. by Hervé Pagès <[email protected]> 2017-10-24 21:02:18 -0700;
  • 7d130e2 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-24 23:41:30 -0400;
  • b7e8d5b bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-24 23:35:46 -0400;
  • 788b154 (origin/RELEASE_3_5, RELEASE_3_5) Work around a regression in R 3.4.2. The regression breaks calling the paste() generic defined in BiocGenerics in some particular contexts. by Hervé Pagès <[email protected]> 2017-10-03 18:07:00 -0700;
  • c5d84fe Work around a regression in R 3.4.2. The regression breaks calling the paste() generic defined in BiocGenerics in some particular contexts. by Hervé Pagès <[email protected]> 2017-10-03 18:07:00 -0700;
  • f0fba49 use pruning.mode="coarse" instead of force=TRUE when calling seqlevels() setter by Herve Pages <[email protected]> 2017-04-29 21:23:05 +0000;
  • dc50e4a bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:50:57 +0000;
  • 7d4a670 Creating branch for BioC 3.5 release by Herve Pages <[email protected]> 2017-04-24 19:45:44 +0000;
  • 0233683 bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:25:24 +0000;
  • fe48b9a bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 19:10:43 +0000;
  • 48ec04f (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <[email protected]> 2016-10-17 19:00:47 +0000;
  • bc10cf4 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 18:45:06 +0000;
  • f520787 Dispatch on the appropriate plot method was failing because I forgot to import the plot methods from Rgraphviz. Fixed. by Herve Pages <[email protected]> 2016-10-17 18:41:03 +0000;
  • e5e8842 Don't run plot() command in TSPCsg examples. For some obscure reasons, dispatch on the appropriate plot method fails. by Herve Pages <[email protected]> 2016-10-17 17:42:52 +0000;
  • a3051e7 fix "plot" method for SplicingGraphs objects by Herve Pages <[email protected]> 2016-10-05 06:01:45 +0000;
  • 4abd277 import plot() from graphics by Herve Pages <[email protected]> 2016-07-12 09:29:28 +0000;
  • 2ef41b9 - compare() was renamed pcompare() in S4Vectors --> change code accordingly - use UTF-8 encoding in DESCRIPTION and Rd files so I can have my accents back by Herve Pages <[email protected]> 2016-07-12 09:05:23 +0000;
  • 7693851 bump version after creating 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:30:44 +0000;
  • 71804e0 (origin/RELEASE_3_3, RELEASE_3_3) Creating branch for BioC 3.3 release. by Dan Tenenbaum <[email protected]> 2016-05-03 21:26:31 +0000;
  • 1e10a66 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:20:18 +0000;
  • 008c1d5 use setdiff() instead of psetdiff() on GRangesList objects by Herve Pages <[email protected]> 2016-02-22 00:08:19 +0000;
  • 7f4514b harmonize file names and functions for testing framework by Herve Pages <[email protected]> 2016-02-12 08:42:03 +0000;
  • 09cffc8 use elementNROWS() instead of elementLengths() by Herve Pages <[email protected]> 2016-01-28 09:05:43 +0000;
  • 6e4c5de Don't use 'order.as.in.query=TRUE' (defunct in BioC 3.3) when calling grglist() on a GAlignmentPairs object. by Herve Pages <[email protected]> 2015-11-02 06:55:12 +0000;
  • 5be508d Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:59:53 +0000;
  • eaef52f (origin/RELEASE_3_2, RELEASE_3_2) Creating branch for BioC 3.2 release. by Dan Tenenbaum <[email protected]> 2015-10-13 19:57:33 +0000;
  • 7332708 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:36:05 +0000;
  • 2095c73 remove regroup() internal helper and use IRanges:::regroupBySupergroup() instead by Herve Pages <[email protected]> 2015-09-14 05:36:40 +0000;
  • a3a942c fix vignette failure caused by update to TxDb.Hsapiens.UCSC.hg19.knownGene by Herve Pages <[email protected]> 2015-08-28 00:08:25 +0000;
  • c7b5927 (origin/RELEASE_3_1, RELEASE_3_1) add AlternativeSplicing and Transcription to biocViews field by Herve Pages <[email protected]> 2015-05-18 19:55:41 +0000;
  • 7226038 add AlternativeSplicing and Transcription to biocViews field by Herve Pages <[email protected]> 2015-05-18 19:54:28 +0000;
  • f28b943 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <[email protected]> 2015-04-16 20:02:44 +0000;
  • 0237d27 Creating branch for BioC 3.1 release. by Dan Tenenbaum <[email protected]> 2015-04-16 20:00:01 +0000;
  • 652aa6e Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <[email protected]> 2015-04-16 19:42:01 +0000;
  • e31b016 oops, an occurence of my old email address was left behind by Herve Pages <[email protected]> 2015-02-25 23:11:25 +0000;
  • 0d72143 Update Fred Hutch email address to new official domain (fredhutch.org instead of fhcrc.org) by Herve Pages <[email protected]> 2015-02-25 22:43:24 +0000;
  • 1d57ccf Rsamtools is now required instead of suggested only by Herve Pages <[email protected]> 2015-01-07 20:07:56 +0000;
  • 00ea746 add a few missing imports by Herve Pages <[email protected]> 2015-01-06 07:58:11 +0000;
  • 95b4fa0 fix some broken links by Herve Pages <[email protected]> 2015-01-06 07:13:31 +0000;
  • 01f0896 Explicitely sort the hits returned by findOverlaps() (they are not returned fully sorted anymore now that findOverlaps() is based on the NCList algo). by Herve Pages <[email protected]> 2015-01-06 07:02:14 +0000;
  • d0a3750 Rsamtools isNotPrimaryRead re-named isSecondaryAlignment by Martin Morgan <[email protected]> 2014-12-14 20:58:28 +0000;
  • c17b6bf tweak to accomodate addition of all.equal.environment() to R 3.2 by Herve Pages <[email protected]> 2014-10-20 20:53:34 +0000;
  • 3cf026e follow renaming of makeTranscriptDb*() functions to makeTxDb*() by Herve Pages <[email protected]> 2014-10-20 18:55:58 +0000;
  • 7124546 Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <[email protected]> 2014-10-13 21:47:41 +0000;
  • b048620 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <[email protected]> 2014-10-13 21:46:02 +0000;
  • b60c98a Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <[email protected]> 2014-10-13 21:38:33 +0000;
  • 7b7a635 update pre-computed results used in vignette by Herve Pages <[email protected]> 2014-10-02 21:50:20 +0000;
  • be6c86f follow renaming of TranscriptDb class -> TxDb by Herve Pages <[email protected]> 2014-07-28 22:44:01 +0000;
  • 79e3ebb fix bug in internal utility commonStrand.RleList() by Herve Pages <[email protected]> 2014-07-18 16:56:17 +0000;
  • 345968b - Fix assignReads() when reads are paired-end. - Update precomputed results used in the vignette. - Address some other minor issues in the vignette. by Herve Pages <[email protected]> 2014-07-17 02:44:19 +0000;