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@@ -376,37 +376,6 @@ test_that("Works for TARGET-NBL data", { |
376 | 376 |
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377 | 377 |
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-test_that("Works for TARGET-NBL data", { |
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- skip_on_bioc() |
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- skip_if_offline() |
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- |
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- |
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- query <- GDCquery( |
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- project = "TARGET-WT", |
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- data.category = "Transcriptome Profiling", |
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- experimental.strategy = "RNA-Seq", |
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- workflow.type = "STAR - Counts", |
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- data.type = "Gene Expression Quantification", |
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- access = "open", |
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- barcode = c( |
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- "TARGET-30-PASYPX-01A-01R", |
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- "TARGET-30-PANKFE-01A-01R", |
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- "TARGET-30-PAIXIF-01A-01R", |
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- "TARGET-20-PAWUEX-EOI2-14A", |
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- "TARGET-30-PAPUAR-01A-01R", |
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- "TARGET-30-PASCFC-01A", |
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- "TARGET-30-PAPTFZ-01A" |
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- ) |
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- ) |
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- |
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- GDCdownload(query) |
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- expect_equal(nrow(query$results[[1]]),7) |
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- expect_no_error({ |
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- data <- GDCprepare(query, summarizedExperiment = TRUE) |
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- }) |
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- expect_equal(ncol(data),7) |
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-}) |
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- |
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410 | 379 |
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test_that("Works for TARGET-ALL-P3 data", { |
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skip_on_bioc() |