Bioconductor Code: TCGAbiolinks

Graph of TCGAbiolinks

2cea937c (HEAD -> devel, origin/devel, origin/HEAD) Removing supraHex by Tiago Chedraoui Silva <[email protected]> 2025-06-20 06:26:48 -0700;
12a434e7 Merge remote-tracking branch 'upstream/devel' by Tiago Chedraoui Silva <[email protected]> 2025-06-20 06:26:41 -0700;
98442f8a Removing supraHex by Tiago Chedraoui Silva <[email protected]> 2025-06-20 06:26:33 -0700;
78fe9bbf bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:52:45 -0400;
8b740221 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:52:45 -0400;
0d92403b Adding days to follow up to GDC prepare by Tiago Chedraoui Silva <[email protected]> 2025-04-07 09:25:01 -0700;
56a304b7 some improvements for <a href="#639">#639</a> by Tiago Chedraoui Silva <[email protected]> 2025-04-07 08:53:21 -0700;
9a37a859 Add days to last follow up from the new GDC API model <a href="#639">#639</a> by Tiago Chedraoui Silva <[email protected]> 2025-04-07 08:24:11 -0700;
93c796a4 (origin/RELEASE_3_20, RELEASE_3_20) Version bump by Tiago Chedraoui Silva <[email protected]> 2025-03-06 08:21:50 -0800;
40752356 Fix GDC client downlaod by Chedraoui Silva <[email protected]> 2025-02-17 17:42:36 -0500;
b431dc91 Fix for cases with no tratment information <a href="#640">#640</a> by Chedraoui Silva <[email protected]> 2025-02-02 22:06:34 -0500;
75cd2330 Version bump by Chedraoui Silva <[email protected]> 2025-01-31 14:21:34 -0500;
27190ea1 Fixes error reported in <a href="#639">#639</a> by Chedraoui Silva <[email protected]> 2025-01-31 14:21:08 -0500;
aef2f8ad Merge with bioconductor by Chedraoui Silva <[email protected]> 2025-01-24 10:30:15 -0500;
49806cd0 Merge remote-tracking branch 'upstream/devel' by Chedraoui Silva <[email protected]> 2025-01-24 10:29:56 -0500;
033951b6 Update ATAC-seq path by Chedraoui Silva <[email protected]> 2025-01-24 10:29:43 -0500;
cd39121b (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:03:07 -0400;
32384fab bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:03:07 -0400;
0ce7e265 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:45:10 -0400;
c270a758 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:45:10 -0400;
9c3dc4bf Fixing documentation by Tiago Silva <[email protected]> 2024-04-17 14:17:36 -0400;
e78993d1 Merge pull request <a href="#625">#625</a> from fabianjkrueger/patch-1 by Tiago Chedraoui Silva <[email protected]> 2024-04-10 13:12:01 -0400;
f3fc90b7 Fixed a typo in query.Rmd by Fabian Janosch Krüger <[email protected]> 2024-04-10 18:15:44 +0200;
6a9b2571 (origin/RELEASE_3_18, RELEASE_3_18) Removing dnet from package by Tiago Silva <[email protected]> 2024-03-26 11:41:22 -0400;
2cfe1825 Minor code style changes by Tiago Silva <[email protected]> 2024-03-26 11:40:05 -0400;
3f5efb99 Removing dnet from package as it is not available in CRAN. by Tiago Silva <[email protected]> 2024-03-26 11:36:07 -0400;
6ca1d438 Version bump by Tiago Silva <[email protected]> 2024-03-06 15:07:03 -0500;
b596b1f2 Version bump by Tiago Silva <[email protected]> 2024-01-30 20:07:53 -0500;
bfd9e470 Version bump by Tiago Silva <[email protected]> 2024-01-30 20:05:22 -0500;
51be9d27 Momentary fix for issue #616. TARGET-NBL DNA methylation cases has a suffix that is breaking the match. Is this the same for all platforms ? by Tiago Silva <[email protected]> 2024-01-25 12:19:40 -0500;
3598148c Update by Tiago Silva <[email protected]> 2023-11-27 15:06:46 -0300;
c4457d9c Fixing MAF for BEATAML <a href="#573">#573</a> by Tiago Silva <[email protected]> 2023-11-27 15:05:44 -0300;
84cf1d0b Message for duplicated samples by Tiago Silva <[email protected]> 2023-11-17 15:43:31 -0300;
93fd0bdc Fix <a href="#610">#610</a> by Tiago Silva <[email protected]> 2023-11-16 11:28:24 -0300;
36436f05 Fixing maf file reading by Tiago Silva <[email protected]> 2023-11-05 19:14:30 -0300;
3e2a6c0e Merge branch 'master' of github.com:BioinformaticsFMRP/TCGAbiolinks into devel by Tiago Silva <[email protected]> 2023-11-05 19:07:27 -0300;
a5c9e2d0 Version bump by Tiago Silva <[email protected]> 2023-11-05 19:02:57 -0300;
2d22d3e1 Merge branch 'devel' of git.bioconductor.org:packages/TCGAbiolinks into devel by Tiago Silva <[email protected]> 2023-11-05 19:02:28 -0300;
c1b9dfef Fixes <a href="#609">#609</a> by Tiago Silva <[email protected]> 2023-11-05 19:01:35 -0300;
f6784101 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:44:46 -0400;
493ef0db bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:44:46 -0400;
40ea78f4 (origin/RELEASE_3_17, RELEASE_3_17) Update by Tiago Silva <[email protected]> 2023-10-05 12:52:55 -0400;
33c5e828 Improving messages for classifier by Tiago Silva <[email protected]> 2023-10-05 12:47:37 -0400;
3759bc7c Improve messages for classifier by Tiago Silva <[email protected]> 2023-10-05 12:45:17 -0400;
0a57d759 Version bump by Tiago Silva <[email protected]> 2023-10-05 12:40:38 -0400;
573ce0ee Update glioma classifier to handle missing probes in EPIC v2. Probably will need to update the model later. <a href="#599">#599</a> by Tiago Silva <[email protected]> 2023-10-05 12:40:21 -0400;
cc95e932 Version bump by Tiago Silva <[email protected]> 2023-09-08 11:16:20 -0400;
186b622e Fixes <a href="#597">#597</a> by Tiago Silva <[email protected]> 2023-09-08 11:16:01 -0400;
b0b75a07 Version bump by Tiago Silva <[email protected]> 2023-09-08 11:03:38 -0400;
3fc605c6 Updating read MAF function <a href="#573">#573</a> by Tiago Silva <[email protected]> 2023-09-08 11:03:16 -0400;
325d40b3 Adding CPTAC-2 to list. Need to review with previous work needs to be commit. by Tiago Silva <[email protected]> 2023-09-08 10:34:07 -0400;
bc39be30 Merge branch 'devel' into RELEASE_3_17 by Tiago Silva <[email protected]> 2023-06-06 13:50:41 -0400;
9a80b478 Fixing test by Tiago Silva <[email protected]> 2023-06-06 13:17:43 -0400;
ad025eb9 Finishing TARGET-AML fixing by Tiago Silva <[email protected]> 2023-06-06 11:52:20 -0400;
48c4b425 Merge by Tiago Silva <[email protected]> 2023-06-05 16:45:07 -0400;
a4c3804d Merge pull request <a href="#586">#586</a> from BioinformaticsFMRP/devel by Tiago Chedraoui Silva <[email protected]> 2023-06-05 16:43:18 -0400;
dc73efdc Fixing <a href="#584">#584</a> by Tiago Silva <[email protected]> 2023-06-05 16:42:51 -0400;
70f809e5 Version bump by Tiago Silva <[email protected]> 2023-06-02 15:19:07 -0400;
70549bc7 Fixing downloads for files.per.chunk = 1 by Tiago Silva <[email protected]> 2023-06-02 15:18:48 -0400;
6c183034 Version bump by Tiago Silva <[email protected]> 2023-05-25 12:34:35 -0400;
316cabf8 Merge branch 'devel' into RELEASE_3_17 by Tiago Silva <[email protected]> 2023-05-23 22:39:18 -0400;
084a6d52 Merge pull request <a href="#583">#583</a> from BioinformaticsFMRP/devel by Tiago Chedraoui Silva <[email protected]> 2023-05-23 22:38:24 -0400;
34ba89cb Fix clinical parsing if no follow up information if found by Tiago Silva <[email protected]> 2023-05-23 22:33:40 -0400;
5bc64a8c Merge pull request <a href="#582">#582</a> from BioinformaticsFMRP/devel by Tiago Chedraoui Silva <[email protected]> 2023-05-22 14:37:58 -0400;
3b51a987 Fixing tests by Tiago Silva <[email protected]> 2023-05-22 14:17:55 -0400;
b6b7e5aa Removing debug code, increasing timeout for query by default. by Tiago Silva <[email protected]> 2023-05-18 11:33:11 -0400;
b2bc706f Making some changes to the latest version. Removing legacy/harmonized from folder structure by Tiago Silva <[email protected]> 2023-05-18 10:53:48 -0400;
d0a43d3e Update News by Tiago Silva <[email protected]> 2023-05-12 20:48:27 -0400;
18b7b547 Removing legacy database by Tiago Silva <[email protected]> 2023-05-12 20:45:21 -0400;
73c8c6a2 Removing legacy from API functions by Tiago Silva <[email protected]> 2023-05-12 20:42:17 -0400;
3ca02453 Removing legacy option by Tiago Silva <[email protected]> 2023-05-10 09:41:15 -0400;
727c6028 Version bump by Tiago Silva <[email protected]> 2023-05-08 12:57:46 -0400;
d7020f77 Removing legacy argument from vignette by Tiago Silva <[email protected]> 2023-05-08 12:53:01 -0400;
c8404f5f Stating to remove legacy archive from TCGAbiolinks, since it will be shutdown by GDC by Tiago Silva <[email protected]> 2023-05-06 11:00:13 -0400;
9cd8bcf8 Version bump by Tiago Silva <[email protected]> 2023-05-05 14:22:16 -0400;
3a08838b Git push by Tiago Silva <[email protected]> 2023-05-05 14:19:41 -0400;
ef7feb27 Bug fix by Tiago Silva <[email protected]> 2023-05-05 14:18:50 -0400;
56af0fcb Merge remote-tracking branch 'upstream/master' by Tiago Silva <[email protected]> 2023-05-05 14:11:18 -0400;
dd6c78f8 Fixing vignette by Tiago Silva <[email protected]> 2023-05-05 14:08:38 -0400;
bbdc8de0 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:40:58 -0400;
c2284243 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:40:58 -0400;
66031744 Remove mutate all, type.covert already works on the data frame by Tiago Silva <[email protected]> 2023-04-17 10:10:59 -0400;
2465ea65 Update matchedMetExp to use star counts. by Tiago Silva <[email protected]> 2023-04-15 19:57:50 -0400;
5c72fafc Removing warnings by Tiago Silva <[email protected]> 2023-03-20 12:51:32 -0400;
d8ea9810 Invert JSON retrievel to GET strategy. Seems to be working better. by Tiago Silva <[email protected]> 2023-03-10 14:51:03 -0500;
428d27cc version bump by Tiago Silva <[email protected]> 2023-02-17 12:23:43 -0500;
28e90f1b version bump by Tiago Silva <[email protected]> 2023-02-17 12:23:24 -0500;
c4e2eee7 version bump by Tiago Silva <[email protected]> 2023-02-15 17:40:11 -0500;
ccfcbe0c version bump by Tiago Silva <[email protected]> 2023-02-15 17:37:50 -0500;
4332a456 version bump by Tiago Silva <[email protected]> 2023-02-15 17:37:36 -0500;
9287794f version bump by Tiago Silva <[email protected]> 2023-02-15 17:35:58 -0500;
8b20970c version bump by Tiago Silva <[email protected]> 2023-02-15 17:35:45 -0500;
46a3fa18 version bump by Tiago Silva <[email protected]> 2023-02-15 17:25:58 -0500;
8a44a54f Merge remote-tracking branch 'upstream/master' by Tiago Silva <[email protected]> 2023-02-15 17:22:23 -0500;
d23ada1e Reducing runtime bioconductor request by Tiago Silva <[email protected]> 2023-02-15 17:20:37 -0500;
d53f8118 Start to reduce runtime requested by bioconductor team by Tiago Silva <[email protected]> 2023-02-15 17:01:06 -0500;
15acadb6 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:12:02 -0400;
14d1ed9a (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:12:02 -0400;
2075a4ca <a href="#546">#546</a> Updating days_to_follow_up and vital status Should we add a parameter to control this update? by Tiago Silva <[email protected]> 2022-10-04 11:12:23 -0400;
3d99f1c7 version bump by Tiago Silva <[email protected]> 2022-09-19 14:23:52 -0400;