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Fixing MAF for BEATAML #573

Tiago Silva authored on 27/11/2023 18:05:44
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@@ -139,7 +139,7 @@ GDCprepare <- function(
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     }
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     cases <- ifelse(
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-        grepl("TCGA|TARGET|CGCI-HTMCP-CC|CPTAC-2",query$results[[1]]$project %>% unlist()),
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+        grepl("TCGA|TARGET|CGCI-HTMCP-CC|CPTAC-2|BEATAML1.0-COHORT",query$results[[1]]$project %>% unlist()),
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         query$results[[1]]$cases,
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         query$results[[1]]$sample.submitter_id
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     )