% Generated by roxygen2: do not edit by hand % Please edit documentation in R/TENxIO-package.R \docType{package} \name{TENxIO} \alias{TENxIO} \alias{TENxIO-package} \title{TENxIO: A Bioconductor package for importing 10X Genomics files} \description{ The package provides file classes based on \code{BiocIO} for common file extensions found in the 10X Genomics website. } \section{Supported file types}{ Here is a table of supported file and file extensions and their imported classes:\tabular{lll}{ \strong{Extension} \tab \strong{Class} \tab \strong{Imported as} \cr .h5 \tab TENxH5 \tab SingleCellExperiment w/ TENxMatrix \cr .mtx / .mtx.gz \tab TENxMTX \tab SummarizedExperiment w/ dgCMatrix \cr .tar.gz \tab TENxFileList \tab SingleCellExperiment w/ dgCMatrix \cr peak_annotation.tsv \tab TENxPeaks \tab GRanges \cr fragments.tsv.gz \tab TENxFragments \tab RaggedExperiment \cr .tsv / .tsv.gz \tab TENxTSV \tab tibble \cr } } \seealso{ Useful links: \itemize{ \item \url{https://github.com/waldronlab/TENxIO} \item Report bugs at \url{https://github.com/waldronlab/TENxIO/issues} } } \author{ \strong{Maintainer}: Marcel Ramos \email{[email protected]} (\href{https://orcid.org/0000-0002-3242-0582}{ORCID}) }