Package: circRNAprofiler
Type: Package
Title: circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
Version: 1.23.1
Author: Simona Aufiero
Maintainer: Simona Aufiero <[email protected]>
Description: R-based computational framework for a comprehensive in silico 
    analysis of circRNAs. This computational framework allows to combine and 
    analyze circRNAs previously detected by multiple publicly available 
    annotation-based circRNA detection tools. It covers different aspects of 
    circRNAs analysis from differential expression analysis, evolutionary 
    conservation, biogenesis to functional analysis.
License: GPL-3
Encoding: UTF-8
biocViews: Annotation, StructuralPrediction, FunctionalPrediction, GenePrediction, 
    GenomeAssembly, DifferentialExpression
Depends: 
    R(>= 4.5.0)
RoxygenNote: 7.2.3
Suggests: 
    testthat,
    knitr,
    roxygen2,
    rmarkdown,
    devtools,
    gridExtra,
    ggpubr,
    VennDiagram,
    BSgenome.Mmusculus.UCSC.mm9,
    BSgenome.Hsapiens.UCSC.hg38,
    BSgenome.Mmusculus.UCSC.mm10,
    BiocManager,
Imports:
    dplyr,
    magrittr,
    readr,
    rtracklayer,
    stringr,
    stringi,
    DESeq2,
    edgeR,
    GenomicRanges,
    IRanges,
    seqinr,
    R.utils,
    reshape2,
    ggplot2,
    utils,
    rlang,
    S4Vectors,
    stats,
    GenomeInfoDb,
    universalmotif,
    AnnotationHub,
    BSgenome.Hsapiens.UCSC.hg19,
    Biostrings,
    gwascat,
    BSgenome,
VignetteBuilder: 
    knitr
URL: 
    https://github.com/Aufiero/circRNAprofiler
BugReports: 
    https://github.com/Aufiero/circRNAprofiler/issues