# Version 1.0.0 (Oct 29, 2019) - First release on bioconductor # Version 1.1.2 (development version) (Dic 15, 2019) - Improved vignettes - In plotMotifs function: - To avoid infinity as a value for fold change, 1 was added to number of occurences of each motif found in the foreground and background target sequences before the normalization. - Added angle param for the rotation angle of the axis labels. - Added removeNegLog2FC param to remove the RBPs having a negative log2FC. - volcanoPlot function: - Added geneSet param that allows to show only specified host gene names. - In getMotifs function: - Included possibilities to use motifs of RBPs from MEME database # Version 1.1.3 (development version) (Dic 19, 2019) - In plotMotifs function: - Added n param for filtering the motifs. # Version 1.1.4 (development version) (Jen 08, 2020) - In getMotifs function: - Fixed a bug when trimming the BSJ sequences. E.g. by setting width = 6, the BSJ sequences are trimmed so that only 5 nucleotides are left at each side of the BSJ. If width = 7, then 6 nucleotides are left at each side of the BSJ etc. # Version 1.1.5 (development version) (Jen 09, 2020) - In plotMotifs function: - Before only motifs found in the foreground sequences were reported. Now also motifs found in the background are reported in the output. # Version 1.1.14 (development version) (Jen 09, 2020) - In mergeBSJunctions function: - Since different detection tools can report sligtly different coordinates before grouping the back-spliced junctions, it is now possible to fix the latter using the gtf file. See param fixBSJsWithGTF. # Version 1.2.0 (April 27, 2020) - Second release on bioconductor # Version 1.3.1 (development version) - Added files to fix bugs # Version 1.4.0 (October 27, 2020) - Third release on bioconductor # Version 1.5.3 (development version) - Removed citr package from DESCRIPTION # Version 1.8.0 (October 27, 2021) - Fifth release on bioconductor # Version 1.15.2 (October 10, 2023) - Possibility to use a maximum of 3 unsupported/‘other’ tools. # Version 1.15.3 (October 24, 2023) - Fixed bug due to dplyr::bind\_rows()