@@ -1,6 +1,6 @@

 Package: crisprScore

-Version: 1.1.7

-Date: 2022-06-30

+Version: 1.1.8

+Date: 2022-07-18

 Title: On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

 Authors@R: c(

     person("Jean-Philippe", "Fortin", email = "[email protected]", role = c("aut", "cre", "cph")),

@@ -33,6 +33,7 @@ importFrom(basilisk,BasiliskEnvironment)

 importFrom(basilisk,basiliskRun)

 importFrom(basilisk,basiliskStart)

 importFrom(basilisk,basiliskStop)

+importFrom(basilisk,obtainEnvironmentPath)

 importFrom(basilisk,setBasiliskFork)

 importFrom(methods,is)

 importFrom(randomForest,randomForest)

@@ -39,6 +39,7 @@

 #' 

 #' @export

 #' @importFrom basilisk basiliskStart basiliskStop basiliskRun

+#' @importFrom basilisk obtainEnvironmentPath

 getAzimuthScores <- function(sequences, fork=FALSE){

     sequences <- .checkSequenceInputs(sequences)

     if (unique(nchar(sequences))!=30){

@@ -64,7 +65,7 @@ getAzimuthScores <- function(sequences, fork=FALSE){

     outputfile <- file.path(dir, "output.txt")

       # Ready to get the scores

-    env <- basilisk:::.obtainEnvironmentPath(env_azimuth)

+    env <- basilisk::obtainEnvironmentPath(env_azimuth)

     basilisk.utils::activateEnvironment(env)

     programFile <- system.file("python",

                                "azimuth/getAzimuth.py",

@@ -73,7 +73,7 @@ getDeepCpf1Scores <- function(sequences,

     outputfile <- file.path(dir, "output.txt")

     # Ready to get the scores

-    env <- basilisk:::.obtainEnvironmentPath(env_deepcpf1)

+    env <- basilisk::obtainEnvironmentPath(env_deepcpf1)

     basilisk.utils::activateEnvironment(env)

     programFile <- system.file("python",

                                "deepcpf1/getDeepCpf1.py",

@@ -71,7 +71,7 @@ getDeepSpCas9Scores <- function(sequences,

     outputfile <- file.path(dir, "output.txt")

     # Ready to get the scores

-    env <- basilisk:::.obtainEnvironmentPath(env_deepspcas9)

+    env <- basilisk::obtainEnvironmentPath(env_deepspcas9)

     basilisk.utils::activateEnvironment(env)

     programFile <- system.file("python",

                                "deepspcas9/getDeepSpCas9Scores.py",

@@ -85,7 +85,7 @@ getRuleSet3Scores <- function(sequences,

     outputfile <- file.path(dir, "output.txt")

     # Ready to get the scores

-    env <- basilisk:::.obtainEnvironmentPath(env_rs3)

+    env <- basilisk::obtainEnvironmentPath(env_rs3)

     basilisk.utils::activateEnvironment(env)

     programFile <- system.file("python",

                                "rs3/getRuleSet3ScoresSequence.py",