@@ -1,5 +1,5 @@

 Package: crisprScore

-Version: 1.1.9

+Version: 1.1.10

 Date: 2022-07-18

 Title: On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

 Authors@R: c(

@@ -449,8 +449,8 @@ getCasRxRFScores <- function(mrnaSequence,

   Sys.setenv("PATH" = paste(Sys.getenv('PATH'),

                             bin.RNAhybrid, sep = ':'))  

-  bashScript <- system.file(package="Cas13design")

-  bashScript <- file.path(bashScript, "scripts/RNAhyb.sh")

+  bashScript <- system.file(package="crisprScore")

+  bashScript <- file.path(bashScript, "casrxrf/RNAhyb.sh")

   # transform to DNAstringSet

   GuideSeq = DNAStringSet(dat[["spacer"]])

new file mode 100644

@@ -0,0 +1,8 @@

+#!/bin/bash

+#$ -cwd

+

+while read -r line; do

+	g=$(echo $line | cut -d "," -f 1 )

+	t=$(echo $line | cut -d "," -f 2 )

+	RNAhybrid -c -s 3utr_human ${g} ${t}

+done < $1

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