Federico Marini authored on 12/09/2024 13:07:22
| ... | ... |
@@ -7,7 +7,7 @@ |
| 7 | 7 |
\item{...}{Ignored arguments.}
|
| 8 | 8 |
} |
| 9 | 9 |
\value{
|
| 10 |
-All functions throw a warning, with a deprecation message pointing |
|
| 10 |
+All functions throw a warning, with a deprecation message pointing |
|
| 11 | 11 |
towards its descendent (if available). |
| 12 | 12 |
} |
| 13 | 13 |
\description{
|
| ... | ... |
@@ -16,14 +16,15 @@ Their successors are also listed. |
| 16 | 16 |
} |
| 17 | 17 |
\details{
|
| 18 | 18 |
The successors of these functions are likely coming after the rework that |
| 19 |
-led to the creation of the `mosdef` package. See more into its |
|
| 19 |
+led to the creation of the \code{mosdef} package. See more into its
|
|
| 20 | 20 |
documentation for more details. |
| 21 | 21 |
} |
| 22 | 22 |
\section{Transitioning to the mosdef framework}{
|
| 23 | 23 |
|
| 24 |
- |
|
| 25 |
-* [topGOtable()] is now being replaced by the more flexible |
|
| 26 |
-[mosdef::run_topGO()] function |
|
| 24 |
+\itemize{
|
|
| 25 |
+\item \code{\link[=topGOtable]{topGOtable()}} is now being replaced by the more flexible
|
|
| 26 |
+\code{\link[mosdef:run_topGO]{mosdef::run_topGO()}} function
|
|
| 27 |
+} |
|
| 27 | 28 |
} |
| 28 | 29 |
|
| 29 | 30 |
\examples{
|
Federico Marini authored on 11/09/2024 23:10:50
| 1 | 1 |
new file mode 100644 |
| ... | ... |
@@ -0,0 +1,35 @@ |
| 1 |
+% Generated by roxygen2: do not edit by hand |
|
| 2 |
+% Please edit documentation in R/deprecated.R |
|
| 3 |
+\name{deprecated}
|
|
| 4 |
+\alias{deprecated}
|
|
| 5 |
+\title{Deprecated functions in pcaExplorer}
|
|
| 6 |
+\arguments{
|
|
| 7 |
+\item{...}{Ignored arguments.}
|
|
| 8 |
+} |
|
| 9 |
+\value{
|
|
| 10 |
+All functions throw a warning, with a deprecation message pointing |
|
| 11 |
+towards its descendent (if available). |
|
| 12 |
+} |
|
| 13 |
+\description{
|
|
| 14 |
+Functions that are on their way to the function afterlife. |
|
| 15 |
+Their successors are also listed. |
|
| 16 |
+} |
|
| 17 |
+\details{
|
|
| 18 |
+The successors of these functions are likely coming after the rework that |
|
| 19 |
+led to the creation of the `mosdef` package. See more into its |
|
| 20 |
+documentation for more details. |
|
| 21 |
+} |
|
| 22 |
+\section{Transitioning to the mosdef framework}{
|
|
| 23 |
+ |
|
| 24 |
+ |
|
| 25 |
+* [topGOtable()] is now being replaced by the more flexible |
|
| 26 |
+[mosdef::run_topGO()] function |
|
| 27 |
+} |
|
| 28 |
+ |
|
| 29 |
+\examples{
|
|
| 30 |
+# try(topGOtable()) |
|
| 31 |
+ |
|
| 32 |
+} |
|
| 33 |
+\author{
|
|
| 34 |
+Federico Marini |
|
| 35 |
+} |