Bioconductor Code: pcaExplorer

Graph of pcaExplorer

996dcd7 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:01:02 -0400;
c394b92 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 11:01:02 -0400;
11c744f version bump, 3.1.1 by Federico Marini <[email protected]> 2024-12-19 21:48:49 +0100;
f461570 updated news by Federico Marini <[email protected]> 2024-12-19 21:48:40 +0100;
9c694b2 adding anchors of package names in function calls of the docs by Federico Marini <[email protected]> 2024-12-19 21:48:32 +0100;
d40d8da Merge remote-tracking branch 'upstream/devel' into devel by Federico Marini <[email protected]> 2024-12-16 19:29:43 +0100;
6e7ceea (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:09:58 -0400;
9b24e2a (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:09:58 -0400;
d221cb6 adding the deprecated part into the pkgdown docs to have it correctly rendered by Federico Marini <[email protected]> 2024-09-25 19:43:01 +0200;
6904f0d version bump, 2.99.1 by Federico Marini <[email protected]> 2024-09-25 19:12:50 +0200;
ff3e81b updated news by Federico Marini <[email protected]> 2024-09-25 19:12:32 +0200;
d7314c2 working a bit more on the pcaplot test suite by Federico Marini <[email protected]> 2024-09-25 19:09:24 +0200;
da8ae5e pcaplot now defaults (cleverly) with respect to the `intgroup` parameter, picking the first column in the colData slot by Federico Marini <[email protected]> 2024-09-25 19:09:12 +0200;
1b939e8 running the tests for the pca2go via limma quick way by Federico Marini <[email protected]> 2024-09-25 18:47:05 +0200;
ac1dc7a avoiding warnings, always a good thing by Federico Marini <[email protected]> 2024-09-25 18:46:48 +0200;
855d253 expanding a healthy bit on the test suite for better coverage by Federico Marini <[email protected]> 2024-09-25 18:46:36 +0200;
7f80154 remaking a bit the test suite to make sure it keeps working but it is most efficient in terms of runtime and coverage by Federico Marini <[email protected]> 2024-09-25 18:01:59 +0200;
6744736 Merge pull request <a href="#22">#22</a> from federicomarini/mosdefied-pcaExplorer by Federico Marini <[email protected]> 2024-09-20 16:23:29 +0200;
61f0fb3 including new logo in the vignette, better rendering by Federico Marini <[email protected]> 2024-09-20 12:03:01 +0200;
44a2a94 mosdef dep (>= 1.1.0) + no more depending on the github version by Federico Marini <[email protected]> 2024-09-20 10:20:46 +0200;
f9dd936 allowing pcaExplorer to build while mosdef builds on the bbs by Federico Marini <[email protected]> 2024-09-13 16:33:39 +0200;
fcb4556 correct way of loading demo data by Federico Marini <[email protected]> 2024-09-13 16:32:23 +0200;
1f52265 bumping the version to 2.99.0, expecting a major v bump in the coming release by Federico Marini <[email protected]> 2024-09-13 13:22:01 +0200;
4cf99bf library and data calls use quotes (most fixes) by Federico Marini <[email protected]> 2024-09-13 13:21:25 +0200;
e63fe6d markdownified roxygen blocks by Federico Marini <[email protected]> 2024-09-12 15:07:22 +0200;
6b1c78f updated news by Federico Marini <[email protected]> 2024-09-12 15:06:15 +0200;
ee53c09 using roxygen + md by Federico Marini <[email protected]> 2024-09-12 15:06:06 +0200;
746cf72 removing paste from message by Federico Marini <[email protected]> 2024-09-12 11:52:55 +0200;
7cb49f1 sapply -> vapply by Federico Marini <[email protected]> 2024-09-12 11:52:46 +0200;
1381223 from cat to message by Federico Marini <[email protected]> 2024-09-12 11:45:21 +0200;
56b7edf changing the wording a bit by Federico Marini <[email protected]> 2024-09-12 11:45:14 +0200;
7fabbea trying to fix GHAs on linux by Federico Marini <[email protected]> 2024-09-12 02:14:35 +0200;
ef4b473 LazyData field removed by Federico Marini <[email protected]> 2024-09-12 02:07:13 +0200;
08896d6 version bump, 2.31.1 by Federico Marini <[email protected]> 2024-09-12 02:04:03 +0200;
7fb1c5b added news item by Federico Marini <[email protected]> 2024-09-12 02:03:23 +0200;
19630ae fixed indentation in the report template by Federico Marini <[email protected]> 2024-09-12 01:57:06 +0200;
25e21d5 report template also using gene_plot by Federico Marini <[email protected]> 2024-09-12 01:55:21 +0200;
e68b857 namespace updated by Federico Marini <[email protected]> 2024-09-12 01:55:09 +0200;
a06b264 gene plot widgets now use the gene_plot function from mosdef by Federico Marini <[email protected]> 2024-09-12 01:54:57 +0200;
4b553f1 removing legacy implementation by Federico Marini <[email protected]> 2024-09-12 01:20:45 +0200;
9a07dab news updated by Federico Marini <[email protected]> 2024-09-12 01:10:58 +0200;
74f8118 manpage rendered for the deprecated function(s) by Federico Marini <[email protected]> 2024-09-12 01:10:50 +0200;
41f3f45 mentioning deprecation in the vignette by Federico Marini <[email protected]> 2024-09-12 01:10:38 +0200;
c5ae0a4 deprecation of topGOtable in favor of `mosdef::run_topGO()` by Federico Marini <[email protected]> 2024-09-12 01:10:26 +0200;
5b7a6d0 internally using mosdef::run_topGO now in pca2go by Federico Marini <[email protected]> 2024-09-12 01:09:27 +0200;
4a05bf7 adding ignored todo file by Federico Marini <[email protected]> 2024-09-12 01:01:41 +0200;
b1ceadd swapping order of title and authors by Federico Marini <[email protected]> 2024-09-12 00:14:55 +0200;
cf37586 bumped roxygen version by Federico Marini <[email protected]> 2024-09-12 00:14:28 +0200;
bb12fb3 Merge remote-tracking branch 'upstream/devel' into devel by Federico Marini <[email protected]> 2024-05-02 16:24:50 +0200;
883a346 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:50:20 -0400;
f513ba6 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:50:20 -0400;
aeee4a8 new format for license by Federico Marini <[email protected]> 2024-04-07 12:48:27 +0200;
d6893aa version bump, 2.29.2 by Federico Marini <[email protected]> 2024-04-07 12:30:34 +0200;
bffe703 updating roxygen version and pkg doc keyword by Federico Marini <[email protected]> 2024-04-07 12:30:06 +0200;
0586cdc version bump, 2.29.1 by Federico Marini <[email protected]> 2024-04-07 12:23:18 +0200;
cda552d shrinking size of screenshots, package wide by Federico Marini <[email protected]> 2024-04-07 12:19:15 +0200;
8220adc removed locally built pkgdown by Federico Marini <[email protected]> 2024-04-07 12:18:39 +0200;
5eac0d0 updating GHA to deploy when pushing to the devel branch by Federico Marini <[email protected]> 2024-03-27 13:25:48 +0100;
1d2a8fd Merge remote-tracking branch 'upstream/devel' into devel by Federico Marini <[email protected]> 2023-10-27 10:26:58 +0200;
034b074 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:49:32 -0400;
bc5fa86 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 10:49:32 -0400;
4a87c29 removing gfortran specific step by Federico Marini <[email protected]> 2023-05-05 12:39:43 +0200;
2fced96 (origin/RELEASE_3_17, RELEASE_3_17) Version bump, 2.26.1 by Federico Marini <[email protected]> 2023-04-28 23:04:12 +0200;
c4b5582 fixed readme with logo and badges by Federico Marini <[email protected]> 2023-04-28 23:00:32 +0200;
b827d17 re-rendered pkgdown by Federico Marini <[email protected]> 2023-04-28 23:00:15 +0200;
f084d12 added logo by Federico Marini <[email protected]> 2023-04-28 23:00:00 +0200;
eb3d173 re-rendered pkgdown, cleaning up by Federico Marini <[email protected]> 2023-04-28 22:18:10 +0200;
aeab56f version bump, 2.27.1 by Federico Marini <[email protected]> 2023-04-28 18:39:01 +0200;
64c3f57 substituting parameter for report previewing - was `fragment.only`, is now `template` by Federico Marini <[email protected]> 2023-04-28 18:38:30 +0200;
1b4b77f bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:46:16 -0400;
4b06254 bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:46:16 -0400;
132d3fb version bump, 2.25.2 by Federico Marini <[email protected]> 2023-04-20 21:04:20 +0200;
b7ab315 added markdown as suggested dependency after changes in BBS by Federico Marini <[email protected]> 2023-04-20 21:04:10 +0200;
4289594 Added ShinyApps to biocViews by Federico Marini <[email protected]> 2023-04-20 21:03:25 +0200;
b151d5d version bump, 2.25.1 by Federico Marini <[email protected]> 2023-04-12 19:47:16 +0200;
7cba979 add refs to webshot2/chromote for taking snapshots of DT-based content by Federico Marini <[email protected]> 2023-04-12 19:46:28 +0200;
7d97241 updated roxygen version number by Federico Marini <[email protected]> 2023-04-12 19:45:46 +0200;
05d71e7 Merge remote-tracking branch 'upstream/master' by Federico Marini <[email protected]> 2022-11-03 15:03:12 +0100;
7d019e7 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:13:31 -0400;
15ff062 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:13:31 -0400;
578ccd1 updating GHAs by Federico Marini <[email protected]> 2022-10-21 15:43:44 +0200;
d8180cc bump2 for GHA by Federico Marini <[email protected]> 2022-09-07 17:45:32 +0200;
43c2a88 bump for GHA by Federico Marini <[email protected]> 2022-09-07 17:45:24 +0200;
dc207c6 version bump, 2.23.1 by Federico Marini <[email protected]> 2022-09-07 17:40:03 +0200;
0d0ff85 updated roxygen version by Federico Marini <[email protected]> 2022-09-07 17:37:14 +0200;
2e156ec explicitly adding markdown as dep for GHAs by Federico Marini <[email protected]> 2022-05-28 09:57:43 +0200;
126f595 updating gha to use bioc-actions by Federico Marini <[email protected]> 2022-05-27 15:47:08 +0200;
39a87a7 Version bump, 2.23.1 by Federico Marini <[email protected]> 2022-05-01 10:54:55 +0200;
6fc7bb5 updating citation(s) for the package by Federico Marini <[email protected]> 2022-05-01 10:54:29 +0200;
ba8d53c bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:31:37 +0000;
ce2a13b (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:31:37 +0000;
e4c392f version bump, 2.21.3 by Federico Marini <[email protected]> 2022-03-21 23:40:06 +0100;
f5e3178 updated news by Federico Marini <[email protected]> 2022-03-21 23:39:57 +0100;
92f6e27 (origin/RELEASE_3_14, RELEASE_3_14) Version bump, 2.20.2 by Federico Marini <[email protected]> 2022-03-21 23:37:38 +0100;
f7d3968 removing hard coded parts for percent of variance explained, when returning the compact data frame by Federico Marini <[email protected]> 2022-03-21 23:24:01 +0100;
b8ad8ab removing hard coded parts for percent of variance explained, when returning the compact data frame by Federico Marini <[email protected]> 2022-03-21 23:24:01 +0100;
00b2ba9 Update README.md by Federico Marini <[email protected]> 2022-03-01 14:32:04 +0100;
5c7468d Version bump, 2.21.2 by Federico Marini <[email protected]> 2022-02-28 22:49:15 +0100;
069adca adding note to the vignette specifying heads up when working e.g. with yeast data by Federico Marini <[email protected]> 2022-02-28 22:49:05 +0100;
25b69ae adding key_for_genenames parameter by Federico Marini <[email protected]> 2022-02-28 22:48:43 +0100;