# Generated by roxygen2 (4.0.0): do not edit by hand

export(create_db)
export(makeCalls)
export(makePeptideSet)
export(normalizeArray)
export(plotArrayImage)
export(plotArrayResiduals)
export(restab)
export(shinyPepStat)
export(slidingMean)
export(summarizePeptides)
exportClasses(peptideSet)
exportMethods("[")
exportMethods("clade")
exportMethods("end")
exportMethods("featureID")
exportMethods("pepZscore")
exportMethods("pepZscore<-")
exportMethods("peptide")
exportMethods("peptide<-")
exportMethods("position")
exportMethods("ranges")
exportMethods("ranges<-")
exportMethods("show")
exportMethods("start")
exportMethods("subset")
exportMethods("summary")
exportMethods("values")
exportMethods("width")
import(data.table)
import(methods)
importClassesFrom(Biobase,ExpressionSet)
importClassesFrom(Biobase,Versioned)
importClassesFrom(Biobase,VersionedBiobase)
importClassesFrom(Biobase,eSet)
importClassesFrom(GenomicRanges,GRanges)
importClassesFrom(GenomicRanges,GRangesList)
importClassesFrom(IRanges,IRanges)
importFrom(Biobase,"exprs<-")
importFrom(Biobase,"pData<-")
importFrom(Biobase,"preproc<-")
importFrom(Biobase,"sampleNames<-")
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,assayData)
importFrom(Biobase,experimentData)
importFrom(Biobase,exprs)
importFrom(Biobase,pData)
importFrom(Biobase,phenoData)
importFrom(Biobase,preproc)
importFrom(Biobase,protocolData)
importFrom(Biobase,rowMedians)
importFrom(Biobase,sampleNames)
importFrom(GenomicRanges,GRanges)
importFrom(GenomicRanges,GRangesList)
importFrom(GenomicRanges,seqnames)
importFrom(IRanges,IRanges)
importFrom(IRanges,space)
importFrom(fields,smooth.2d)
importFrom(ggplot2,aes_string)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_tile)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,scale_fill_gradient2)
importFrom(ggplot2,theme)
importFrom(limma,backgroundCorrect)
importFrom(limma,read.maimages)
importFrom(plyr,ddply)
importFrom(tools,file_ext)
importFrom(tools,file_path_sans_ext)
importMethodsFrom(GenomicRanges,"mcols<-")
importMethodsFrom(GenomicRanges,as.data.frame)
importMethodsFrom(GenomicRanges,mcols)
importMethodsFrom(GenomicRanges,names)
importMethodsFrom(IRanges,"ranges<-")
importMethodsFrom(IRanges,"values<-")
importMethodsFrom(IRanges,cbind)
importMethodsFrom(IRanges,lapply)
importMethodsFrom(IRanges,ranges)
importMethodsFrom(IRanges,rbind)
importMethodsFrom(IRanges,unlist)
importMethodsFrom(IRanges,values)
importMethodsFrom(IRanges,width)