... | ... |
@@ -20,6 +20,10 @@ export(reduceFeatures) |
20 | 20 |
export(reducePCA) |
21 | 21 |
export(reducePLSDA) |
22 | 22 |
export(reduceTSNE) |
23 |
+export(removeBlankRatio) |
|
24 |
+export(removeFeatures) |
|
25 |
+export(removeMiss) |
|
26 |
+export(removeRSD) |
|
23 | 27 |
export(scaleCols) |
24 | 28 |
export(scaleRows) |
25 | 29 |
importClassesFrom(SummarizedExperiment,SummarizedExperiment) |
... | ... |
@@ -51,7 +51,7 @@ log2-transformed before calculating a correlation matrix. Ignored if type |
51 | 51 |
is "pairs". Choose the same value used in the feature grouping.} |
52 | 52 |
} |
53 | 53 |
\value{ |
54 |
-A pair plot or graph. |
|
54 |
+A graph or pair plot. |
|
55 | 55 |
} |
56 | 56 |
\description{ |
57 | 57 |
Visualizes feature grouping results produced by \link{clusterFeatures}. A |
... | ... |
@@ -70,7 +70,7 @@ se <- clusterFeatures(faahko_se, i = "knn_vsn", rtime_var = "rtmed") |
70 | 70 |
plotRTgroup(se, i = "knn_vsn", group = "FG.22") |
71 | 71 |
|
72 | 72 |
## Pairwise scatter |
73 |
-plotRTgroup(se, i = 3, group = "FG.01", cor_method = "spearman", |
|
73 |
+plotRTgroup(se, i = 3, group = "FG.22", cor_method = "spearman", |
|
74 | 74 |
log2 = TRUE, type = "pairs") |
75 | 75 |
|
76 | 76 |
} |