Bioconductor Code: qmtools

Graph of qmtools

e6f19a5 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:49:05 -0400;
eb7de24 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:49:05 -0400;
d02f681 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:10:22 -0400;
8b97db4 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:10:22 -0400;
0cf44a1 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:41:43 -0400;
df09e56 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:41:43 -0400;
19cf6bf Added validation options for PLS-DA. by Jaehyun Joo <[email protected]> 2023-11-14 16:52:29 -0500;
806bab8 Added VIP scores for PLS-DA. by Jaehyun Joo <[email protected]> 2023-11-13 23:57:56 -0500;
e40166a bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:41:06 -0400;
48d7be4 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:41:06 -0400;
ac5926e bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:37:21 -0400;
7fcb8b0 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:37:21 -0400;
45ad15e Import viridis color from scales package using viridis_pal to suppress build warning by Jaehyun Joo <[email protected]> 2023-04-03 09:46:24 -0400;
25eab3d Updated package metadata by Jaehyun Joo <[email protected]> 2023-04-02 17:27:04 -0400;
b7f60c6 Updated vignette to include compareSamples by Jaehyun Joo <[email protected]> 2023-04-02 17:16:04 -0400;
d97b76b Test module for compareSamples by Jaehyun Joo <[email protected]> 2023-04-02 16:06:16 -0400;
78b556b Moved limma from Suggests to Imports by Jaehyun Joo <[email protected]> 2023-04-02 14:45:18 -0400;
da9a8da Prototyped compareSamples function by Jaehyun Joo <[email protected]> 2023-04-02 14:38:22 -0400;
07b2b0e Fixed typo in plotMiss manual by Jaehyun Joo <[email protected]> 2023-03-31 17:45:29 -0400;
baa9338 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:26:50 -0400;
e3660f9 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:26:50 -0400;
2f8f95a bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:22:36 +0000;
4de5611 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:22:36 +0000;
980ec85 Fixed the vignette warnings regarding graphical parameter reset from the queried values. by Jaehyun Joo <[email protected]> 2022-04-25 17:43:23 -0400;
e0c57a1 Updated installation instruction in README.md by Jaehyun Joo <[email protected]> 2022-04-12 11:10:57 -0400;
63466e4 Bumped version 0.99.2; responded to the 2nd round of Bioconductor review by Jaehyun Joo <[email protected]> 2022-04-11 21:51:57 -0400;
e3ceb2c Bumped version to trigger new build on Bioconductor review by Jaehyun Joo <[email protected]> 2022-03-21 15:42:22 -0400;
18f8168 Use explicit string instead of indices when extracting variance component by Jaehyun Joo <[email protected]> 2022-03-21 15:19:48 -0400;
b4458bb Replaced cat with message function by Jaehyun Joo <[email protected]> 2022-03-21 15:19:13 -0400;
a9d6cf0 Fixed the issues in gitignore for *.R files by Jaehyun Joo <[email protected]> 2022-03-18 09:00:01 -0400;
f1153ee Fixed URL in readme. by Jaehyun Joo <[email protected]> 2022-03-17 18:12:46 -0400;
a77e5df Updated git URL by Jaehyun Joo <[email protected]> 2022-03-17 18:04:21 -0400;
3f22a8c finished removeFeatures. by Jaehyun Joo <[email protected]> 2022-03-17 17:57:00 -0400;
ed31cd8 prototyped removeFeatures. by Jaehyun Joo <[email protected]> 2022-03-15 22:35:23 -0400;
93c4d21 typo in examples. by Jaehyun Joo <[email protected]> 2022-03-15 16:56:24 -0400;
193dc8b completed revision except for the package name change. by Jaehyun Joo <[email protected]> 2022-03-14 16:58:54 -0400;
2111ffe Passed build checks. by Jaehyun Joo <[email protected]> 2022-03-13 21:32:50 -0400;
92fb276 Prototyped feature grouping by Jaehyun Joo <[email protected]> 2022-03-11 01:15:30 -0500;
d4791ef Restructured the package according to the Bioc review. by Jaehyun Joo <[email protected]> 2022-03-07 01:34:11 -0500;
40124c2 removed software from the biocViews by Jaehyun Joo <[email protected]> 2022-01-03 23:41:42 -0500;
bcf149c Merge pull request <a href="#9">#9</a> from HimesGroup/main by Jaehyun Joo <[email protected]> 2022-01-03 20:38:12 -0800;
9eaa9e9 Merge remote-tracking branch 'origin/main' into main by Jaehyun Joo <[email protected]> 2022-01-03 23:37:10 -0500;
74b999b Updated biocViews. by Jaehyun Joo <[email protected]> 2022-01-03 23:35:58 -0500;
85ac24d Merge pull request <a href="#8">#8</a> from HimesGroup/main by Jaehyun Joo <[email protected]> 2022-01-03 20:16:23 -0800;
3a3d0a8 Removed GitHub action badge. by Jaehyun Joo <[email protected]> 2022-01-03 23:15:46 -0500;
2cef79b Merge pull request <a href="#7">#7</a> from HimesGroup/main by Jaehyun Joo <[email protected]> 2022-01-03 20:12:43 -0800;
ef03056 Removed github actions for package submission. by Jaehyun Joo <[email protected]> 2022-01-03 22:56:14 -0500;
d5d45a8 Updated to include biplot. by Jaehyun Joo <[email protected]> 2022-01-03 22:56:00 -0500;
b2a3430 Bumped to version 0.99.0 for the package submission. by Jaehyun Joo <[email protected]> 2022-01-03 22:12:27 -0500;
31501c1 Added introduction vignette. by Jaehyun Joo <[email protected]> 2022-01-03 20:43:14 -0500;
a1fb4a1 created news.md by Jaehyun Joo <[email protected]> 2022-01-02 19:50:49 -0500;
09c54e4 modified format overall for Bioconductor submission. by Jaehyun Joo <[email protected]> 2022-01-01 23:24:44 -0500;
43ed5f1 Unit-tests for plot functions. by Jaehyun Joo <[email protected]> 2022-01-01 23:24:30 -0500;
63ab306 unit-tests for imputation, normalization, and reduction. by Jaehyun Joo <[email protected]> 2021-12-31 00:22:59 -0500;
78103b6 Unit-tests for poplin subsetting. by Jaehyun Joo <[email protected]> 2021-12-24 23:39:25 -0500;
b1cb6ae Addressed all build warnings. by Jaehyun Joo <[email protected]> 2021-12-23 20:20:01 -0500;
b87cffb defined formal poplinRaw methods and unit-tests. by Jaehyun Joo <[email protected]> 2021-12-22 23:41:17 -0500;
6002ded changed poplinReducedData to poplinReduced. by Jaehyun Joo <[email protected]> 2021-12-21 23:18:36 -0500;
b2c2acb Set aliases for poplin internal document. by Jaehyun Joo <[email protected]> 2021-12-21 22:10:57 -0500;
4dd873f removed xcms dependency. by Jaehyun Joo <[email protected]> 2021-12-20 19:16:24 -0500;
9c1d76d Fixed issues regarding global variable binding. by Jaehyun Joo <[email protected]> 2021-12-20 17:13:57 -0500;
81f9496 Updated ex data to remove unnecessary package dependence. by Jaehyun Joo <[email protected]> 2021-12-19 21:04:27 -0500;
977c2df Set up GitHub actions. by Jaehyun Joo <[email protected]> 2021-12-18 00:18:46 -0500;
5f3218f unit-tests for poplinReducedData. by Jaehyun Joo <[email protected]> 2021-12-18 00:14:40 -0500;
c209145 unit-tests for poplinRaw and poplinData. by Jaehyun Joo <[email protected]> 2021-12-17 22:26:50 -0500;
a5adc22 Updated show method for the poplin objects. by Jaehyun Joo <[email protected]> 2021-12-16 20:33:56 -0500;
13edfb6 little updates on faahko data. by Jaehyun Joo <[email protected]> 2021-12-16 20:25:53 -0500;
f6f8b60 Updated example data: not to include the filled peaks. by Jaehyun Joo <[email protected]> 2021-12-16 19:46:51 -0500;
78b6871 Removed poplinArgs class. by Jaehyun Joo <[email protected]> 2021-12-16 14:59:33 -0500;
e58c82e Cleaned left dangling. by Jaehyun Joo <[email protected]> 2021-12-15 22:54:32 -0500;
10a4727 Update PCA reference. by Jaehyun Joo <[email protected]> 2021-12-15 22:50:06 -0500;
7a43617 Changed default method of PCA when missing values are present in the input. by Jaehyun Joo <[email protected]> 2021-12-15 22:40:35 -0500;
7aca6bc Updated biplot method and manual. by Jaehyun Joo <[email protected]> 2021-12-15 21:41:42 -0500;
ef8df23 added boxplot manual. by Jaehyun Joo <[email protected]> 2021-12-14 22:24:05 -0500;
8053b23 text annotations in naplot and corplot. by Jaehyun Joo <[email protected]> 2021-12-14 21:07:44 -0500;
d021703 added corplot manual. by Jaehyun Joo <[email protected]> 2021-12-14 00:26:40 -0500;
7a6e45c NA plot manual. by Jaehyun Joo <[email protected]> 2021-12-13 22:38:49 -0500;
873a296 added faahko example data. by Jaehyun Joo <[email protected]> 2021-12-12 22:07:42 -0500;
58c9622 made function names shorter. by Jaehyun Joo <[email protected]> 2021-12-11 21:54:59 -0500;
2869d7d method documents update. by Jaehyun Joo <[email protected]> 2021-12-10 22:09:42 -0500;
a0209a8 poplin raw data methods by Jaehyun Joo <[email protected]> 2021-12-10 17:45:04 -0500;
c21d68c More documents for poplin class and internals. by Jaehyun Joo <[email protected]> 2021-12-10 00:19:43 -0500;
5460914 fix the issue in package description file due to missing commma. by Jaehyun Joo <[email protected]> 2021-12-05 23:28:10 -0500;
ecaba5d Added manual for poplin_reduce. by Jaehyun Joo <[email protected]> 2021-11-29 22:11:39 -0500;
492d166 Added manual for poplin_impute. by Jaehyun Joo <[email protected]> 2021-11-29 00:59:07 -0500;
16741a8 Added manual for poplin_normalize. by Jaehyun Joo <[email protected]> 2021-11-24 21:07:10 -0500;
316dae7 Added description for poplinReducedData. by Jaehyun Joo <[email protected]> 2021-11-19 23:54:29 -0500;
77d5cb1 Added description for poplinData methods. by Jaehyun Joo <[email protected]> 2021-11-15 22:25:08 -0500;
7d6607c Documented poplin-class. by Jaehyun Joo <[email protected]> 2021-11-15 22:24:38 -0500;
e8ff6e3 Scoreplot for poplin object. by Jaehyun Joo <[email protected]> 2021-11-13 22:28:39 -0500;
21c97c9 biplot for poplin object. by Jaehyun Joo <[email protected]> 2021-11-13 21:50:06 -0500;
850f111 S3 dispatch for naplot by Jaehyun Joo <[email protected]> 2021-11-13 17:35:40 -0500;
180cc41 Merge pull request <a href="#6">#6</a> from HimesGroup/main by Jaehyun Joo <[email protected]> 2021-11-12 18:25:00 -0800;
61f24c9 S3 dispatch for box and correlation plots. by Jaehyun Joo <[email protected]> 2021-11-12 21:19:59 -0500;
ead1b08 Changed normalizer arg to method for consistency. by Jaehyun Joo <[email protected]> 2021-11-11 16:55:18 -0500;
396edd4 Removed missingCount method by Jaehyun Joo <[email protected]> 2021-11-10 22:29:56 -0500;
0ff4936 fix axis label issue for PCA and PLSDA by Jaehyun Joo <[email protected]> 2021-11-10 22:16:18 -0500;
e6e1c5a Updated naplot to use heatmaply:::arrange_plots as hide_colorbar works now. by Jaehyun Joo <[email protected]> 2021-11-10 17:36:50 -0500;
b4f5422 export plsda by Jaehyun Joo <[email protected]> 2021-10-25 08:33:39 -0400;
cd019bb renamed file. by Jaehyun Joo <[email protected]> 2021-10-16 23:34:16 -0400;