1. rTRM
  2. Graph
Graph of rTRM
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  • 2dbf43a (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:24:54 -0400;
  • f880211 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 10:24:54 -0400;
  • 241c6db (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:46:39 -0400;
  • ad13709 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 09:46:39 -0400;
  • f94a5e6 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:32:24 -0400;
  • eb0091c (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 10:32:24 -0400;
  • 18a69c2 bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:54:41 -0400;
  • d1183dd (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 09:54:41 -0400;
  • 58e991f bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:27:35 -0400;
  • fd7abe1 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 10:27:35 -0400;
  • 6f969e7 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:08:23 -0400;
  • 76bbcd6 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:08:23 -0400;
  • d4ccef6 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:15:19 +0000;
  • addc6b0 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 15:15:19 +0000;
  • 708637b bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:08:38 +0000;
  • 29f92ac (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 16:08:38 +0000;
  • 3023691 Version bump. by Diego Diez <[email protected]> 2021-06-19 05:20:53 +0000;
  • 4aa506b Add vignette references to bibtex file. by Diego Diez <[email protected]> 2021-06-19 05:20:30 +0000;
  • 94c332d Update .gitignore. by Diego Diez <[email protected]> 2021-06-19 05:20:07 +0000;
  • 176a2e8 Version bump. by Diego Diez <[email protected]> 2021-06-19 03:38:36 +0000;
  • a27fae0 Use HTML vignette. by Diego Diez <[email protected]> 2021-06-19 01:47:26 +0000;
  • c07f9d8 Adjust title case. by Diego Diez <[email protected]> 2021-06-19 01:47:09 +0000;
  • e679065 Fix checking object class. by Diego Diez <[email protected]> 2021-06-19 01:46:06 +0000;
  • 1fa16e6 bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 15:59:24 +0000;
  • 4d427e2 (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 15:59:24 +0000;
  • 67c7bd7 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:51:24 -0400;
  • 2908ebc (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 10:51:24 -0400;
  • 9864115 bump x.y.z version to odd y following creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:35:09 +0000;
  • 302f656 (origin/RELEASE_3_11, RELEASE_3_11) bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by Nitesh Turaga <[email protected]> 2020-04-27 18:35:09 +0000;
  • f6d03ef bump x.y.z version to odd y after creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:36:52 -0400;
  • fa52516 (origin/RELEASE_3_10, RELEASE_3_10) bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by Nitesh Turaga <[email protected]> 2019-10-29 13:08:42 -0400;
  • deacbf9 bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 12:11:22 -0400;
  • e908578 (origin/RELEASE_3_9, RELEASE_3_9) bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by Nitesh Turaga <[email protected]> 2019-05-02 11:53:43 -0400;
  • a1b91c6 bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:54:31 -0400;
  • 2ee5bac (origin/RELEASE_3_8, RELEASE_3_8) bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by vobencha <[email protected]> 2018-10-30 11:41:51 -0400;
  • b894e32 bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:41:39 -0400;
  • 4ca197f (origin/RELEASE_3_7, RELEASE_3_7) bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by vobencha <[email protected]> 2018-04-30 10:35:30 -0400;
  • 6db2597 bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:52:51 -0400;
  • 2177fa8 (origin/RELEASE_3_6, RELEASE_3_6) bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by Hervé Pagès <[email protected]> 2017-10-30 12:40:03 -0400;
  • 36408fe bump x.y.z versions to odd y after creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:50:57 +0000;
  • c3d9f88 (origin/RELEASE_3_5, RELEASE_3_5) Creating branch for BioC 3.5 release by Herve Pages <[email protected]> 2017-04-24 19:45:44 +0000;
  • 3b2e3df bump x.y.z versions to even y prior to creation of 3_5 branch by Herve Pages <[email protected]> 2017-04-24 19:25:24 +0000;
  • b76c192 bump x.y.z versions to odd 'y' after creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 19:10:43 +0000;
  • 2d71839 (origin/RELEASE_3_4, RELEASE_3_4) Creating branch for BioC 3.4 release by Herve Pages <[email protected]> 2016-10-17 19:00:47 +0000;
  • 3183ec5 bump x.y.z versions to even 'y' prior to creation of 3_4 branch by Herve Pages <[email protected]> 2016-10-17 18:45:06 +0000;
  • 22ad07a (origin/RELEASE_3_3, RELEASE_3_3) Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <[email protected]> 2016-05-15 20:18:19 +0000;
  • 8ace9db Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by Dan Tenenbaum <[email protected]> 2016-05-15 20:14:22 +0000;
  • 2c69bf9 Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <[email protected]> 2016-05-11 23:15:25 +0000;
  • ebce28d Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by Dan Tenenbaum <[email protected]> 2016-05-11 23:05:31 +0000;
  • 1cfac2b bump version after creating 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:30:44 +0000;
  • 56a8485 Creating branch for BioC 3.3 release. by Dan Tenenbaum <[email protected]> 2016-05-03 21:26:31 +0000;
  • 1c94fa4 Bump versions prior to creation of 3.3 branch by Dan Tenenbaum <[email protected]> 2016-05-03 21:20:18 +0000;
  • a103e73 Added imports to NAMESPACE to fix NOTE during R CMD check by D Diez <[email protected]> 2016-03-15 01:59:42 +0000;
  • eeb0f96 svn ignore. by D Diez <[email protected]> 2016-03-09 03:25:43 +0000;
  • 3ed4245 (origin/RELEASE_3_2, RELEASE_3_2) Version bumped by D Diez <[email protected]> 2015-12-25 13:33:59 +0000;
  • cfa34a1 Fixed geom_tile() by D Diez <[email protected]> 2015-12-25 13:33:18 +0000;
  • 1d88907 Version bumped by D Diez <[email protected]> 2015-12-25 13:29:32 +0000;
  • 9f5d0fe Fixed geom_tile() by D Diez <[email protected]> 2015-12-25 13:28:24 +0000;
  • 9a61ba5 Bumped version number of all packages after creation of 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:59:53 +0000;
  • 094fc19 Creating branch for BioC 3.2 release. by Dan Tenenbaum <[email protected]> 2015-10-13 19:57:33 +0000;
  • 53ef475 Bumped versions of all packages prior to creating 3.2 branch. by Dan Tenenbaum <[email protected]> 2015-10-13 19:36:05 +0000;
  • 2e9c27b Submit changes done in git directly... by D Diez <[email protected]> 2015-10-09 03:13:13 +0000;
  • 353b566 Bump version. by D Diez <[email protected]> 2015-06-23 10:21:32 +0000;
  • 3c2a6b9 Fixed NOTES for non-visible global variables. biomaRt and Biostrings are kept in Suggests and used accordingly. DBI is added to Imports and the required methods imported. RSQLite is moved to Imports. by D Diez <[email protected]> 2015-06-23 10:21:24 +0000;
  • 9eed97a Fix NOTE about no visible global function definition. by D Diez <[email protected]> 2015-06-23 10:21:15 +0000;
  • 149e893 Fixed NOTE about use of require in code. by D Diez <[email protected]> 2015-06-23 10:21:08 +0000;
  • 7ec6205 - moved to bioc-mirrors && added project files. by D Diez <[email protected]> 2015-06-23 10:20:59 +0000;
  • 59f0530 Bump versions in trunk after creation of 3.1 branch. by Dan Tenenbaum <[email protected]> 2015-04-16 20:02:44 +0000;
  • ff490f3 (origin/RELEASE_3_1, RELEASE_3_1) Creating branch for BioC 3.1 release. by Dan Tenenbaum <[email protected]> 2015-04-16 20:00:01 +0000;
  • 8e9f313 Bump versions prior to creating 3.1 branch. by Dan Tenenbaum <[email protected]> 2015-04-16 19:42:01 +0000;
  • fb2564c Bumping versions after creating 3.0 release branch. by Dan Tenenbaum <[email protected]> 2014-10-13 21:47:41 +0000;
  • 93784c6 (origin/RELEASE_3_0, RELEASE_3_0) Creating branch for BioC 3.0 release. by Dan Tenenbaum <[email protected]> 2014-10-13 21:46:02 +0000;
  • 8224b18 Bump package versions prior to creating the 3.0 branch. by Dan Tenenbaum <[email protected]> 2014-10-13 21:38:33 +0000;
  • d3c2fb1 Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by D Diez <[email protected]> 2014-09-29 10:24:44 +0000;
  • f02d8c2 Second version bump after creating 2.14 release branch. by Dan Tenenbaum <[email protected]> 2014-04-11 21:21:21 +0000;
  • 383b35c (origin/RELEASE_2_14, RELEASE_2_14) Creating 2.14 release branch. by Dan Tenenbaum <[email protected]> 2014-04-11 21:17:46 +0000;
  • ac74bba First version bump prior to creating 2.14 branch. by Dan Tenenbaum <[email protected]> 2014-04-11 21:07:21 +0000;
  • daa8869 - updated vignette. - updated NEWS. - updated BioGRID data. by D Diez <[email protected]> 2014-04-08 06:07:09 +0000;
  • 3cea475 - updated use of masked genome (now a separate package from BioC 2.14). - minor changes to vignette. by D Diez <[email protected]> 2014-03-26 05:39:33 +0000;
  • f11d8b9 - included dependency (Suggests) on org.Hs.eg.db - version bumped. by D Diez <[email protected]> 2014-03-14 06:48:21 +0000;
  • dc5b4c2 - move from using mget() to select() - improvements to text. by D Diez <[email protected]> 2014-03-14 06:48:17 +0000;
  • 3903eb3 - require annotation packages before getting the objects. by D Diez <[email protected]> 2014-03-14 06:48:12 +0000;
  • 9a15a53 - fixed assignment of label (SYMBOL) to protein in Biogrid function. - updated biogrid ppis with the fix. by D Diez <[email protected]> 2014-03-14 06:48:05 +0000;
  • 1125a42 modify to new biocViews to DESCRIPTION file by Sonali Arora <[email protected]> 2014-03-04 22:12:21 +0000;
  • 13668d4 - remove dependency to tikz device in vignette. - updated biogrid data (March 2014) by D Diez <[email protected]> 2014-03-03 07:19:57 +0000;
  • 2471437 - added ggplot2 to Suggests. - fixed man page for getSimilarityMatrix() - Use plot.igraph() function for ploting graphs. by D Diez <[email protected]> 2014-02-28 05:37:37 +0000;
  • f926c92 - specify minimum igraph version 0.7. - load ggplot2 in vignette. by D Diez <[email protected]> 2014-02-28 05:37:30 +0000;
  • 351ad0c - changed default in getSimilarityMatrix() type="nodes" to type="edges" by D Diez <[email protected]> 2014-02-28 05:37:25 +0000;
  • e8d2fe5 - updated biogrid data. by D Diez <[email protected]> 2014-02-28 05:37:16 +0000;
  • 84580aa - updated CITATION. by D Diez <[email protected]> 2014-02-28 05:37:08 +0000;
  • bbce249 - overall fixes and improvements to vignette, including the PWMEnrich workflow. by D Diez <[email protected]> 2014-02-28 05:37:01 +0000;
  • 889fd3f - remove dependency on annotate package. use select() instead of mget() - code clean up. - clean up package dependencies. by D Diez <[email protected]> 2014-02-14 08:04:40 +0000;
  • ae3afd5 - fixes for igraph 7: graph.intersection.by.name() and graph.union.by.name() have been removed. Now everything is integrated in the no ".by.name" version of the functions. by D Diez <[email protected]> 2014-02-14 04:42:42 +0000;
  • 78b5a04 (origin/RELEASE_2_13, RELEASE_2_13) - further fixes for igraph 7: graph.union.by.name() and graph.intersection.by.name() are no longer available. by D Diez <[email protected]> 2014-02-14 04:31:47 +0000;
  • 1a9fb50 - fixes to adapt to igraph 0.7 - use pie.color and pie instead of piecolor for compatibility with igraph (now plot.igraph can be used directly with vertex.shape="pie") by D Diez <[email protected]> 2014-02-14 03:22:34 +0000;
  • 440e8a5 - changes to adapt to igraph 0.7. - color for pies is stored in pie.color instead of piecolor for compatibility with plot.igraph function (now that can be used with vertex.shape="pie" to obtain similar plot). by D Diez <[email protected]> 2014-02-14 03:11:58 +0000;
  • 7c42643 - increased version number to push latest changes in svn repos. by D Diez <[email protected]> 2014-01-10 08:38:40 +0000;
  • 2e62349 - updated BioGRID data to latest release. also it contains fixes to edge attribute biogrid_count, which was not properly assigned before. by D Diez <[email protected]> 2014-01-09 09:07:40 +0000;
  • 324ccfa - fix commit error. by D Diez <[email protected]> 2014-01-09 09:01:53 +0000;
  • c123561 - fixing some commit error. by D Diez <[email protected]> 2014-01-09 08:58:49 +0000;