- rTRM
- Graph
-
2dbf43a
(HEAD -> devel, origin/devel, origin/HEAD)
bump x.y.z version to odd y following creation of RELEASE_3_21 branch by
A Wokaty <[email protected]>
2025-04-15 10:24:54 -0400;
-
f880211
(origin/RELEASE_3_21, RELEASE_3_21)
bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by
A Wokaty <[email protected]>
2025-04-15 10:24:54 -0400;
-
241c6db
(origin/master)
bump x.y.z version to odd y following creation of RELEASE_3_20 branch by
J Wokaty <[email protected]>
2024-10-29 09:46:39 -0400;
-
ad13709
(origin/RELEASE_3_20, RELEASE_3_20)
bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by
J Wokaty <[email protected]>
2024-10-29 09:46:39 -0400;
-
f94a5e6
bump x.y.z version to odd y following creation of RELEASE_3_19 branch by
J Wokaty <[email protected]>
2024-04-30 10:32:24 -0400;
-
eb0091c
(origin/RELEASE_3_19, RELEASE_3_19)
bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by
J Wokaty <[email protected]>
2024-04-30 10:32:24 -0400;
-
18a69c2
bump x.y.z version to odd y following creation of RELEASE_3_18 branch by
J Wokaty <[email protected]>
2023-10-24 09:54:41 -0400;
-
d1183dd
(origin/RELEASE_3_18, RELEASE_3_18)
bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by
J Wokaty <[email protected]>
2023-10-24 09:54:41 -0400;
-
58e991f
bump x.y.z version to odd y following creation of RELEASE_3_17 branch by
J Wokaty <[email protected]>
2023-04-25 10:27:35 -0400;
-
fd7abe1
(origin/RELEASE_3_17, RELEASE_3_17)
bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by
J Wokaty <[email protected]>
2023-04-25 10:27:35 -0400;
-
6f969e7
bump x.y.z version to odd y following creation of RELEASE_3_16 branch by
J Wokaty <[email protected]>
2022-11-01 11:08:23 -0400;
-
76bbcd6
(origin/RELEASE_3_16, RELEASE_3_16)
bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by
J Wokaty <[email protected]>
2022-11-01 11:08:23 -0400;
-
d4ccef6
bump x.y.z version to odd y following creation of RELEASE_3_15 branch by
Nitesh Turaga <[email protected]>
2022-04-26 15:15:19 +0000;
-
addc6b0
(origin/RELEASE_3_15, RELEASE_3_15)
bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by
Nitesh Turaga <[email protected]>
2022-04-26 15:15:19 +0000;
-
708637b
bump x.y.z version to odd y following creation of RELEASE_3_14 branch by
Nitesh Turaga <[email protected]>
2021-10-26 16:08:38 +0000;
-
29f92ac
(origin/RELEASE_3_14, RELEASE_3_14)
bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by
Nitesh Turaga <[email protected]>
2021-10-26 16:08:38 +0000;
-
3023691
Version bump. by
Diego Diez <[email protected]>
2021-06-19 05:20:53 +0000;
-
4aa506b
Add vignette references to bibtex file. by
Diego Diez <[email protected]>
2021-06-19 05:20:30 +0000;
-
94c332d
Update .gitignore. by
Diego Diez <[email protected]>
2021-06-19 05:20:07 +0000;
-
176a2e8
Version bump. by
Diego Diez <[email protected]>
2021-06-19 03:38:36 +0000;
-
a27fae0
Use HTML vignette. by
Diego Diez <[email protected]>
2021-06-19 01:47:26 +0000;
-
c07f9d8
Adjust title case. by
Diego Diez <[email protected]>
2021-06-19 01:47:09 +0000;
-
e679065
Fix checking object class. by
Diego Diez <[email protected]>
2021-06-19 01:46:06 +0000;
-
1fa16e6
bump x.y.z version to odd y following creation of RELEASE_3_13 branch by
Nitesh Turaga <[email protected]>
2021-05-19 15:59:24 +0000;
-
4d427e2
(origin/RELEASE_3_13, RELEASE_3_13)
bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by
Nitesh Turaga <[email protected]>
2021-05-19 15:59:24 +0000;
-
67c7bd7
bump x.y.z version to odd y following creation of RELEASE_3_12 branch by
Nitesh Turaga <[email protected]>
2020-10-27 10:51:24 -0400;
-
2908ebc
(origin/RELEASE_3_12, RELEASE_3_12)
bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by
Nitesh Turaga <[email protected]>
2020-10-27 10:51:24 -0400;
-
9864115
bump x.y.z version to odd y following creation of RELEASE_3_11 branch by
Nitesh Turaga <[email protected]>
2020-04-27 18:35:09 +0000;
-
302f656
(origin/RELEASE_3_11, RELEASE_3_11)
bump x.y.z version to even y prior to creation of RELEASE_3_11 branch by
Nitesh Turaga <[email protected]>
2020-04-27 18:35:09 +0000;
-
f6d03ef
bump x.y.z version to odd y after creation of RELEASE_3_10 branch by
Nitesh Turaga <[email protected]>
2019-10-29 13:36:52 -0400;
-
fa52516
(origin/RELEASE_3_10, RELEASE_3_10)
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch by
Nitesh Turaga <[email protected]>
2019-10-29 13:08:42 -0400;
-
deacbf9
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch by
Nitesh Turaga <[email protected]>
2019-05-02 12:11:22 -0400;
-
e908578
(origin/RELEASE_3_9, RELEASE_3_9)
bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch by
Nitesh Turaga <[email protected]>
2019-05-02 11:53:43 -0400;
-
a1b91c6
bump x.y.z versions to odd y after creation of RELEASE_3_8 branch by
vobencha <[email protected]>
2018-10-30 11:54:31 -0400;
-
2ee5bac
(origin/RELEASE_3_8, RELEASE_3_8)
bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch by
vobencha <[email protected]>
2018-10-30 11:41:51 -0400;
-
b894e32
bump x.y.z versions to odd y after creation of RELEASE_3_7 branch by
vobencha <[email protected]>
2018-04-30 10:41:39 -0400;
-
4ca197f
(origin/RELEASE_3_7, RELEASE_3_7)
bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch by
vobencha <[email protected]>
2018-04-30 10:35:30 -0400;
-
6db2597
bump x.y.z versions to odd y after creation of RELEASE_3_6 branch by
Hervé Pagès <[email protected]>
2017-10-30 12:52:51 -0400;
-
2177fa8
(origin/RELEASE_3_6, RELEASE_3_6)
bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch by
Hervé Pagès <[email protected]>
2017-10-30 12:40:03 -0400;
-
36408fe
bump x.y.z versions to odd y after creation of 3_5 branch by
Herve Pages <[email protected]>
2017-04-24 19:50:57 +0000;
-
c3d9f88
(origin/RELEASE_3_5, RELEASE_3_5)
Creating branch for BioC 3.5 release by
Herve Pages <[email protected]>
2017-04-24 19:45:44 +0000;
-
-
3b2e3df
bump x.y.z versions to even y prior to creation of 3_5 branch by
Herve Pages <[email protected]>
2017-04-24 19:25:24 +0000;
-
b76c192
bump x.y.z versions to odd 'y' after creation of 3_4 branch by
Herve Pages <[email protected]>
2016-10-17 19:10:43 +0000;
-
2d71839
(origin/RELEASE_3_4, RELEASE_3_4)
Creating branch for BioC 3.4 release by
Herve Pages <[email protected]>
2016-10-17 19:00:47 +0000;
-
-
3183ec5
bump x.y.z versions to even 'y' prior to creation of 3_4 branch by
Herve Pages <[email protected]>
2016-10-17 18:45:06 +0000;
-
22ad07a
(origin/RELEASE_3_3, RELEASE_3_3)
Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by
Dan Tenenbaum <[email protected]>
2016-05-15 20:18:19 +0000;
-
8ace9db
Version bump to trigger package rebuilding now that purl()'ing issue has been correctly identified. knitr does not create purl()'ed (Stangle equivalent) .R files if _R_CHECK_TIMINGS_ is set, which the build system was setting. Now it's not set, so these .R files are now created. See https://github.com/yihui/knitr/issues/1212 for more. by
Dan Tenenbaum <[email protected]>
2016-05-15 20:14:22 +0000;
-
2c69bf9
Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by
Dan Tenenbaum <[email protected]>
2016-05-11 23:15:25 +0000;
-
ebce28d
Bump version of all packages that use knitr for vignettes. This is because of an issue (now fixed) in knitr which failed to create purl()'ed R files from vignette sources and include them in the package. This version bump will cause these packages to propagate with those R files included. by
Dan Tenenbaum <[email protected]>
2016-05-11 23:05:31 +0000;
-
1cfac2b
bump version after creating 3.3 branch by
Dan Tenenbaum <[email protected]>
2016-05-03 21:30:44 +0000;
-
56a8485
Creating branch for BioC 3.3 release. by
Dan Tenenbaum <[email protected]>
2016-05-03 21:26:31 +0000;
-
-
1c94fa4
Bump versions prior to creation of 3.3 branch by
Dan Tenenbaum <[email protected]>
2016-05-03 21:20:18 +0000;
-
a103e73
Added imports to NAMESPACE to fix NOTE during R CMD check by
D Diez <[email protected]>
2016-03-15 01:59:42 +0000;
-
eeb0f96
svn ignore. by
D Diez <[email protected]>
2016-03-09 03:25:43 +0000;
-
3ed4245
(origin/RELEASE_3_2, RELEASE_3_2)
Version bumped by
D Diez <[email protected]>
2015-12-25 13:33:59 +0000;
-
cfa34a1
Fixed geom_tile() by
D Diez <[email protected]>
2015-12-25 13:33:18 +0000;
-
1d88907
Version bumped by
D Diez <[email protected]>
2015-12-25 13:29:32 +0000;
-
9f5d0fe
Fixed geom_tile() by
D Diez <[email protected]>
2015-12-25 13:28:24 +0000;
-
9a61ba5
Bumped version number of all packages after creation of 3.2 branch. by
Dan Tenenbaum <[email protected]>
2015-10-13 19:59:53 +0000;
-
094fc19
Creating branch for BioC 3.2 release. by
Dan Tenenbaum <[email protected]>
2015-10-13 19:57:33 +0000;
-
-
53ef475
Bumped versions of all packages prior to creating 3.2 branch. by
Dan Tenenbaum <[email protected]>
2015-10-13 19:36:05 +0000;
-
2e9c27b
Submit changes done in git directly... by
D Diez <[email protected]>
2015-10-09 03:13:13 +0000;
-
353b566
Bump version. by
D Diez <[email protected]>
2015-06-23 10:21:32 +0000;
-
3c2a6b9
Fixed NOTES for non-visible global variables. biomaRt and Biostrings are kept in Suggests and used accordingly. DBI is added to Imports and the required methods imported. RSQLite is moved to Imports. by
D Diez <[email protected]>
2015-06-23 10:21:24 +0000;
-
9eed97a
Fix NOTE about no visible global function definition. by
D Diez <[email protected]>
2015-06-23 10:21:15 +0000;
-
149e893
Fixed NOTE about use of require in code. by
D Diez <[email protected]>
2015-06-23 10:21:08 +0000;
-
7ec6205
- moved to bioc-mirrors && added project files. by
D Diez <[email protected]>
2015-06-23 10:20:59 +0000;
-
59f0530
Bump versions in trunk after creation of 3.1 branch. by
Dan Tenenbaum <[email protected]>
2015-04-16 20:02:44 +0000;
-
ff490f3
(origin/RELEASE_3_1, RELEASE_3_1)
Creating branch for BioC 3.1 release. by
Dan Tenenbaum <[email protected]>
2015-04-16 20:00:01 +0000;
-
-
8e9f313
Bump versions prior to creating 3.1 branch. by
Dan Tenenbaum <[email protected]>
2015-04-16 19:42:01 +0000;
-
fb2564c
Bumping versions after creating 3.0 release branch. by
Dan Tenenbaum <[email protected]>
2014-10-13 21:47:41 +0000;
-
93784c6
(origin/RELEASE_3_0, RELEASE_3_0)
Creating branch for BioC 3.0 release. by
Dan Tenenbaum <[email protected]>
2014-10-13 21:46:02 +0000;
-
-
8224b18
Bump package versions prior to creating the 3.0 branch. by
Dan Tenenbaum <[email protected]>
2014-10-13 21:38:33 +0000;
-
d3c2fb1
Commit made by the Bioconductor Git-SVN bridge. Consists of 1 commit. by
D Diez <[email protected]>
2014-09-29 10:24:44 +0000;
-
f02d8c2
Second version bump after creating 2.14 release branch. by
Dan Tenenbaum <[email protected]>
2014-04-11 21:21:21 +0000;
-
383b35c
(origin/RELEASE_2_14, RELEASE_2_14)
Creating 2.14 release branch. by
Dan Tenenbaum <[email protected]>
2014-04-11 21:17:46 +0000;
-
-
ac74bba
First version bump prior to creating 2.14 branch. by
Dan Tenenbaum <[email protected]>
2014-04-11 21:07:21 +0000;
-
daa8869
- updated vignette. - updated NEWS. - updated BioGRID data. by
D Diez <[email protected]>
2014-04-08 06:07:09 +0000;
-
3cea475
- updated use of masked genome (now a separate package from BioC 2.14). - minor changes to vignette. by
D Diez <[email protected]>
2014-03-26 05:39:33 +0000;
-
f11d8b9
- included dependency (Suggests) on org.Hs.eg.db - version bumped. by
D Diez <[email protected]>
2014-03-14 06:48:21 +0000;
-
dc5b4c2
- move from using mget() to select() - improvements to text. by
D Diez <[email protected]>
2014-03-14 06:48:17 +0000;
-
3903eb3
- require annotation packages before getting the objects. by
D Diez <[email protected]>
2014-03-14 06:48:12 +0000;
-
9a15a53
- fixed assignment of label (SYMBOL) to protein in Biogrid function. - updated biogrid ppis with the fix. by
D Diez <[email protected]>
2014-03-14 06:48:05 +0000;
-
1125a42
modify to new biocViews to DESCRIPTION file by
Sonali Arora <[email protected]>
2014-03-04 22:12:21 +0000;
-
13668d4
- remove dependency to tikz device in vignette. - updated biogrid data (March 2014) by
D Diez <[email protected]>
2014-03-03 07:19:57 +0000;
-
2471437
- added ggplot2 to Suggests. - fixed man page for getSimilarityMatrix() - Use plot.igraph() function for ploting graphs. by
D Diez <[email protected]>
2014-02-28 05:37:37 +0000;
-
f926c92
- specify minimum igraph version 0.7. - load ggplot2 in vignette. by
D Diez <[email protected]>
2014-02-28 05:37:30 +0000;
-
351ad0c
- changed default in getSimilarityMatrix() type="nodes" to type="edges" by
D Diez <[email protected]>
2014-02-28 05:37:25 +0000;
-
e8d2fe5
- updated biogrid data. by
D Diez <[email protected]>
2014-02-28 05:37:16 +0000;
-
84580aa
- updated CITATION. by
D Diez <[email protected]>
2014-02-28 05:37:08 +0000;
-
bbce249
- overall fixes and improvements to vignette, including the PWMEnrich workflow. by
D Diez <[email protected]>
2014-02-28 05:37:01 +0000;
-
889fd3f
- remove dependency on annotate package. use select() instead of mget() - code clean up. - clean up package dependencies. by
D Diez <[email protected]>
2014-02-14 08:04:40 +0000;
-
ae3afd5
- fixes for igraph 7: graph.intersection.by.name() and graph.union.by.name() have been removed. Now everything is integrated in the no ".by.name" version of the functions. by
D Diez <[email protected]>
2014-02-14 04:42:42 +0000;
-
78b5a04
(origin/RELEASE_2_13, RELEASE_2_13)
- further fixes for igraph 7: graph.union.by.name() and graph.intersection.by.name() are no longer available. by
D Diez <[email protected]>
2014-02-14 04:31:47 +0000;
-
1a9fb50
- fixes to adapt to igraph 0.7 - use pie.color and pie instead of piecolor for compatibility with igraph (now plot.igraph can be used directly with vertex.shape="pie") by
D Diez <[email protected]>
2014-02-14 03:22:34 +0000;
-
440e8a5
- changes to adapt to igraph 0.7. - color for pies is stored in pie.color instead of piecolor for compatibility with plot.igraph function (now that can be used with vertex.shape="pie" to obtain similar plot). by
D Diez <[email protected]>
2014-02-14 03:11:58 +0000;
-
7c42643
- increased version number to push latest changes in svn repos. by
D Diez <[email protected]>
2014-01-10 08:38:40 +0000;
-
2e62349
- updated BioGRID data to latest release. also it contains fixes to edge attribute biogrid_count, which was not properly assigned before. by
D Diez <[email protected]>
2014-01-09 09:07:40 +0000;
-
324ccfa
- fix commit error. by
D Diez <[email protected]>
2014-01-09 09:01:53 +0000;
-
c123561
- fixing some commit error. by
D Diez <[email protected]>
2014-01-09 08:58:49 +0000;