Package: scmeth
Type: Package
Title: Functions to conduct quality control analysis in methylation data
Version: 0.99.27
Author: Divy Kangeyan <[email protected]>
Maintainer: Divy Kangeyan <[email protected]>
Depends: R (>= 3.5.0)
Imports:
  ggplot2,
  knitr,
  rmarkdown,
  bsseq,
  AnnotationHub,
  GenomicRanges,
  reshape2,
  stats,
  utils,
  BSgenome,
  DelayedArray (>= 0.5.15),
  annotatr,
  SummarizedExperiment (>= 1.5.6),
  GenomeInfoDb,
  Biostrings,
  DT,
  ggthemes,
  scales,
  viridis,
  magrittr,
  plyr,
  HDF5Array (>= 1.7.5)
Suggests:
  BSgenome.Mmusculus.UCSC.mm10,
  BSgenome.Hsapiens.NCBI.GRCh38,
  Biobase,
  BiocGenerics
Description: Functions to analyze methylation data can be found here.
             Some functions are relevant for single cell methylation data but most other
             functions can be used for any  methylation data.
             Highlight of this workflow is the comprehensive quality control report.
biocViews: DNAMethylation, QualityControl, Preprocessing, SingleCell
License: GPL-2
LazyData: TRUE
RoxygenNote: 6.0.1
VignetteBuilder: knitr