| ... | ... |
@@ -26,10 +26,10 @@ jobs: |
| 26 | 26 |
fail-fast: false |
| 27 | 27 |
matrix: |
| 28 | 28 |
config: |
| 29 |
- - {os: macOS-latest, r: 'devel', bioc: '3.15'}
|
|
| 29 |
+ - {os: macOS-latest, r: '4.2', bioc: '3.15'}
|
|
| 30 | 30 |
# temporarily commented: rtracklayer installation failing causes error |
| 31 |
- - {os: ubuntu-latest, r: 'devel', bioc: '3.15'}
|
|
| 32 |
- - {os: windows-latest, r: 'devel', bioc: '3.15'}
|
|
| 31 |
+ - {os: ubuntu-latest, r: '4.2', bioc: '3.15'}
|
|
| 32 |
+ - {os: windows-latest, r: '4.2', bioc: '3.15'}
|
|
| 33 | 33 |
#- { os: ubuntu-20.04, r: 'devel', bioc: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/xenial/latest"}
|
| 34 | 34 |
#- {os: ubuntu-latest, r: 'release', bioc: 'devel'}
|
| 35 | 35 |
#- {os: ubuntu-latest, r: 'oldrel-1', bioc: 'devel'}
|
| ... | ... |
@@ -61,11 +61,8 @@ reference: |
| 61 | 61 |
contents: |
| 62 | 62 |
- plot_arch_for_clusters |
| 63 | 63 |
- plot_ggseqlogo_of_seqs |
| 64 |
- - viz_bas_vec_heatmap |
|
| 65 |
- - plot_ggheatmap |
|
| 66 |
- - viz_bas_vec_seqlogo |
|
| 67 |
- - plot_ggseqlogo |
|
| 68 |
- - viz_bas_vec_heatmap_seqlogo |
|
| 64 |
+ - viz_pwm |
|
| 65 |
+ - viz_bas_vec |
|
| 69 | 66 |
- viz_seqs_acgt_mat |
| 70 | 67 |
|
| 71 | 68 |
- title: Manipulate seqArchR result |
| ... | ... |
@@ -74,8 +71,7 @@ reference: |
| 74 | 71 |
- collate_seqArchR_result |
| 75 | 72 |
- collate_clusters |
| 76 | 73 |
- get_seqs_clust_list |
| 77 |
- - make_sinuc_PWMs |
|
| 78 |
- - make_dinuc_PWMs |
|
| 74 |
+ - make_PWMs |
|
| 79 | 75 |
|
| 80 | 76 |
|
| 81 | 77 |
articles: |
