Bioconductor Code: seqArchR

Graph of seqArchR

1b37044 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:48:26 -0400;
686a521 (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:48:26 -0400;
2981ab5 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:09:53 -0400;
c6daa9f (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:09:53 -0400;
2fbbdc7 bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:41:25 -0400;
3c13d82 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:41:25 -0400;
195868f bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:40:47 -0400;
1aef6fe (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:40:47 -0400;
1116870 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:37:03 -0400;
a3b1a34 (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:37:03 -0400;
4100717 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:26:45 -0400;
1bf21a7 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:26:45 -0400;
0d3c38c version bump in devel 1.1.2 -> 1.1.3 by snikumbh <[email protected]> 2022-10-19 11:11:24 +0100;
35595f8 explicitly add packaging module as requirement; roxygen version number update by snikumbh <[email protected]> 2022-10-19 11:08:58 +0100;
fca7f87 version bump on devel by snikumbh <[email protected]> 2022-10-14 14:57:47 +0100;
51f1490 handle future warnings related to alphawith version number checking by snikumbh <[email protected]> 2022-10-14 14:38:42 +0100;
d1da050 suppress warnings via reticulate by snikumbh <[email protected]> 2022-10-14 14:37:51 +0100;
1b48dec version bump in devel by snikumbh <[email protected]> 2022-09-27 17:02:58 +0100;
c273de5 Fixed: Too many warnings from scikit-learn being printed to console by snikumbh <[email protected]> 2022-09-27 17:00:40 +0100;
ce5cc37 bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:22:19 +0000;
f2f1672 (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:22:19 +0000;
d6e1652 version bump by snikumbh <[email protected]> 2022-04-25 14:01:44 +0100;
766cd39 placeholder citation removed temporarily by snikumbh <[email protected]> 2022-04-25 14:00:01 +0100;
5299a81 version bump by snikumbh <[email protected]> 2022-04-25 13:00:22 +0100;
5a251ef removed twitter handle to, hopefully, remedy orcid id display by snikumbh <[email protected]> 2022-04-25 12:57:33 +0100;
5686029 version bump by snikumbh <[email protected]> 2022-04-05 20:28:56 +0100;
96a9dba removing remaining commented code snippets by snikumbh <[email protected]> 2022-04-05 20:27:52 +0100;
b42fb24 version bump by snikumbh <[email protected]> 2022-04-03 23:00:05 +0100;
6b59cd3 rm 2 commented lines by snikumbh <[email protected]> 2022-04-03 22:38:32 +0100;
0b26c43 yml updates minor by snikumbh <[email protected]> 2022-04-03 22:35:13 +0100;
1dfddd6 update R version req to 4.2 by snikumbh <[email protected]> 2022-04-03 03:01:53 +0100;
b30ffd9 version bump by snikumbh <[email protected]> 2022-04-03 02:40:40 +0100;
cc65eea update CITATION file by snikumbh <[email protected]> 2022-04-03 02:39:36 +0100;
abefbf3 new id + remove index.md by snikumbh <[email protected]> 2022-04-03 02:18:58 +0100;
33c55db remove TFBSTools from Suggests field by snikumbh <[email protected]> 2022-04-03 01:44:10 +0100;
81b0373 edit out ref to tfbstools, not reqd anymore/usage dropped by snikumbh <[email protected]> 2022-04-03 01:43:32 +0100;
d1f6453 update tests based on new changes/additions addressing review comments by snikumbh <[email protected]> 2022-04-03 01:40:27 +0100;
1fdc730 address review comments -- remove/replace for loops/funcs by snikumbh <[email protected]> 2022-04-03 01:38:40 +0100;
81b9863 addressing review comments -- removing/replacing some for loops by snikumbh <[email protected]> 2022-04-03 01:37:46 +0100;
af6f0b8 minor text change by snikumbh <[email protected]> 2022-04-03 01:36:36 +0100;
97abf31 minor space adjust by snikumbh <[email protected]> 2022-04-03 01:34:50 +0100;
a85dbeb minor; remove commented funcs by snikumbh <[email protected]> 2022-04-03 01:33:59 +0100;
44ca0f7 minor, adjust spaces by snikumbh <[email protected]> 2022-04-03 01:32:38 +0100;
724c61c minor, adjust spaces by snikumbh <[email protected]> 2022-04-03 01:31:59 +0100;
cf8634c remove stale func now unused by snikumbh <[email protected]> 2022-04-03 01:31:06 +0100;
89631bf remove unused funcs by snikumbh <[email protected]> 2022-04-03 01:30:28 +0100;
a8ef757 cascade change due to change viz_bas_vec func args/argnames by snikumbh <[email protected]> 2022-04-02 00:13:41 +0100;
5ab3609 adjust testsfor get_ohe func takes only DNAString/set by snikumbh <[email protected]> 2022-04-02 00:12:37 +0100;
c4715f4 minor changes by snikumbh <[email protected]> 2022-04-02 00:11:33 +0100;
7ceab60 cleanup commented code; pdf plotting func takes two additional params for pdf w and h by snikumbh <[email protected]> 2022-04-02 00:10:55 +0100;
33f38a7 removed tfbstools::modNW support. not needed by snikumbh <[email protected]> 2022-04-02 00:09:52 +0100;
02c0251 replace one existing for loop with vectorised solution by snikumbh <[email protected]> 2022-04-02 00:07:05 +0100;
360836c address 4 spaces note from BiocCheck by snikumbh <[email protected]> 2022-04-02 00:06:24 +0100;
a2caf1b use func to set position labels and handle plot list into pdf by snikumbh <[email protected]> 2022-04-02 00:05:40 +0100;
309a72c addressing 4 spaces note from BiocCheck by snikumbh <[email protected]> 2022-04-02 00:04:39 +0100;
9b2f75f minor: remove extra empty lines by snikumbh <[email protected]> 2022-04-02 00:03:49 +0100;
121592a rename plot_pwm to viz_pwm; make viz_bas_vec more succint reduce repetition further by snikumbh <[email protected]> 2022-04-01 18:51:14 +0100;
1cb7d5f remove unused func one_hot_decode by snikumbh <[email protected]> 2022-04-01 02:18:24 +0100;
e13a8a8 addressed code repetitions leading reduced funcs and cascading changes by snikumbh <[email protected]> 2022-04-01 02:13:31 +0100;
fc819bc minor/remove commented code by snikumbh <[email protected]> 2022-04-01 02:09:43 +0100;
0ff6eee address code repetition by snikumbh <[email protected]> 2022-03-31 22:14:04 +0100;
92f019f replace individual do.calls with func that existed already by snikumbh <[email protected]> 2022-03-31 22:13:28 +0100;
79a999e modified make_sinuc/dinuc_PWMs funcs to address repetition (so just one func now) and corresponding change by snikumbh <[email protected]> 2022-03-31 22:12:06 +0100;
04388f0 fixing repetition in one hot encoding funcs; made into one func now, much compact by snikumbh <[email protected]> 2022-03-31 17:05:03 +0100;
49af327 address code repetition in get_q2_using_py with _serial version -- removed _serial version as was not needed/used anymore upon BiocParallel introduction by snikumbh <[email protected]> 2022-03-31 12:41:36 +0100;
c4b1546 addressed code repetitions comment in review; adjusted tests that failed by snikumbh <[email protected]> 2022-03-31 12:38:20 +0100;
26eed5e minor changes in textual content by snikumbh <[email protected]> 2022-03-31 12:36:54 +0100;
3e64ed0 add space in check message by snikumbh <[email protected]> 2022-03-31 12:35:49 +0100;
47d9b9a minor by snikumbh <[email protected]> 2022-03-31 12:34:34 +0100;
c0d0a9e additional cli importFrom by snikumbh <[email protected]> 2022-03-31 02:34:39 +0100;
42e589a using BiocStyle by snikumbh <[email protected]> 2022-03-31 02:34:15 +0100;
847761a remove commented code by snikumbh <[email protected]> 2022-03-31 02:13:57 +0100;
5294d2d fix unnecessary forward slash in o_dir; remove as arg where not needed by snikumbh <[email protected]> 2022-03-31 01:52:56 +0100;
387f371 using length as accessor for slot Size of hdist object from hopach by snikumbh <[email protected]> 2022-03-31 01:30:00 +0100;
75050c9 using Biostrings::width instead of direct slot access by snikumbh <[email protected]> 2022-03-31 01:28:51 +0100;
61ffd30 individual importFrom for ggplot2 and ggseqlogo by snikumbh <[email protected]> 2022-03-31 01:15:10 +0100;
7319b38 some imports made specific by snikumbh <[email protected]> 2022-03-29 17:48:48 +0100;
a64b98d version bump by snikumbh <[email protected]> 2022-03-28 02:55:25 +0100;
0164150 minor to some func calls, now specifying compl args by snikumbh <[email protected]> 2022-03-28 02:54:39 +0100;
ecaa00c version bump by snikumbh <[email protected]> 2022-03-26 10:48:15 +0000;
16f8715 tweak examples to avoid timeout -- use pre-computed (and size-reduced) result/mat in examples and test by snikumbh <[email protected]> 2022-03-26 10:47:35 +0000;
af047d4 version bump by snikumbh <[email protected]> 2022-03-26 03:46:49 +0000;
9c475ae adding windows checks with GHA by snikumbh <[email protected]> 2022-03-26 03:42:20 +0000;
71d5033 depend on BiocParallel instead of parallel (possibly, also works for win platforms) by snikumbh <[email protected]> 2022-03-26 03:39:29 +0000;
6d3015d version bump by snikumbh <[email protected]> 2022-03-25 20:08:58 +0000;
22d8082 fix extra colon for this to take effect by snikumbh <[email protected]> 2022-03-25 20:07:01 +0000;
05a2c04 version bump by snikumbh <[email protected]> 2022-03-25 17:32:03 +0000;
16bfa08 exclude win by snikumbh <[email protected]> 2022-03-25 17:30:56 +0000;
7389a77 save time by reading saved result by snikumbh <[email protected]> 2022-03-25 17:28:43 +0000;
ec9e30f fix for spaces note by BiocCheck by snikumbh <[email protected]> 2022-03-25 17:27:48 +0000;
03eb334 rectify printing (and saving to file) of plots by snikumbh <[email protected]> 2022-03-25 17:13:44 +0000;
7e440d4 cleared up changelogs prior to name change by snikumbh <[email protected]> 2022-03-21 01:02:45 +0000;
2b77dcc update changes by snikumbh <[email protected]> 2022-03-20 23:43:46 +0000;
f7e1a48 minor by snikumbh <[email protected]> 2022-03-20 23:43:30 +0000;
00373b3 changes to fix bioccheck notes/warnings: using print, examples for make_sinuc/dinuc funcs by snikumbh <[email protected]> 2022-03-20 17:39:27 +0000;
8e53cb7 make_sinuc/dinuc_pwms func left as exported by snikumbh <[email protected]> 2022-03-20 16:33:16 +0000;
f298a15 make lines fit 80 char limit by snikumbh <[email protected]> 2022-03-20 15:49:24 +0000;
3088d68 increase margin on the right of figure to better accommodate legend by snikumbh <[email protected]> 2022-03-20 15:48:32 +0000;
3da6d9c updated based on make_dinuc/sinuc_pwm funcs removal by snikumbh <[email protected]> 2022-03-20 15:31:23 +0000;
49d2bca unexporting make_dinuc/sinuc_pwm funcs; man pgs deleted by snikumbh <[email protected]> 2022-03-20 15:30:33 +0000;