@@ -9,81 +9,81 @@ License: GPL-3

 Encoding: UTF-8

 LazyData: true

 Collate:

-    'anova_class.R'

-    'HSD_class.R'

-    'mixed_effect_class.R'

-    'HSDEM_class.R'

-    'PCA_class.R'

-    'PCA_plotfcns.R'

-    'PLSDA_class.R'

-    'PLSDA_charts.R'

-    'fold_change_class.R'

-    'PLSFC_class.R'

-    'PLSR_class.R'

-    'autoscale_class.R'

-    'balanced_accuracy_class.R'

-    'blank_filter_class.R'

-    'classical_lsq_class.R'

-    'confounders_clsq_class.R'

-    'd_ratio_filter_class.R'

-    'dataset_chart_classes.R'

-    'factor_barchart_class.R'

-    'filter_by_name_class.R'

-    'filter_na_count.R'

-    'filter_smeta_class.R'

-    'fisher_exact_class.R'

-    'fold_change_int_class.R'

-    'forward_selection_by_rank_class.R'

-    'ggplot_theme_pub.R'

-    'glog_class.R'

-    'grid_search_1d_class.R'

-    'hca_class.R'

-    'kfold_xval_class.R'

-    'kfold_xval_charts.R'

-    'knn_impute_class.R'

-    'kw_rank_sum_class.R'

-    'linear_model_class.R'

-    'log_transform.R'

-    'mean_centre_class.R'

-    'mv_feature_filter_class.R'

-    'mv_sample_filter_class.R'

-    'permutation_test_class.R'

-    'permute_sample_order_class.R'

-    'pqn_norm_method_class.R'

-    'prop_na_class.R'

-    'r_squared_class.R'

-    'rsd_filter.R'

-    'sbcms_dataset_class.R'

-    'split_data_class.R'

-    'structToolbox.R'

-    'tSNE_class.R'

-    'ttest_class.R'

-    'vec_norm_class.R'

-    'wilcox_test_class.R'

+ 'anova_class.R'

+ 'HSD_class.R'

+ 'mixed_effect_class.R'

+ 'HSDEM_class.R'

+ 'PCA_class.R'

+ 'PCA_plotfcns.R'

+ 'PLSDA_class.R'

+ 'PLSDA_charts.R'

+ 'fold_change_class.R'

+ 'PLSFC_class.R'

+ 'PLSR_class.R'

+ 'autoscale_class.R'

+ 'balanced_accuracy_class.R'

+ 'blank_filter_class.R'

+ 'classical_lsq_class.R'

+ 'confounders_clsq_class.R'

+ 'd_ratio_filter_class.R'

+ 'dataset_chart_classes.R'

+ 'factor_barchart_class.R'

+ 'filter_by_name_class.R'

+ 'filter_na_count.R'

+ 'filter_smeta_class.R'

+ 'fisher_exact_class.R'

+ 'fold_change_int_class.R'

+ 'forward_selection_by_rank_class.R'

+ 'ggplot_theme_pub.R'

+ 'glog_class.R'

+ 'grid_search_1d_class.R'

+ 'hca_class.R'

+ 'kfold_xval_class.R'

+ 'kfold_xval_charts.R'

+ 'knn_impute_class.R'

+ 'kw_rank_sum_class.R'

+ 'linear_model_class.R'

+ 'log_transform.R'

+ 'mean_centre_class.R'

+ 'mv_feature_filter_class.R'

+ 'mv_sample_filter_class.R'

+ 'permutation_test_class.R'

+ 'permute_sample_order_class.R'

+ 'pqn_norm_method_class.R'

+ 'prop_na_class.R'

+ 'r_squared_class.R'

+ 'rsd_filter.R'

+ 'sbcms_dataset_class.R'

+ 'split_data_class.R'

+ 'structToolbox.R'

+ 'tSNE_class.R'

+ 'ttest_class.R'

+ 'vec_norm_class.R'

+ 'wilcox_test_class.R'

 Depends: struct

 Imports: ggplot2,

-    pmp,

-    gridExtra,

-    pls,

-    sp,

-    scales,

-    stats,

-    methods,

-    car,

-    grid,

-    reshape2,

-    agricolae,

-    emmeans,

-    nlme,

-    ggthemes,

-    ggdendro,

-    Rtsne

+ pmp,

+ gridExtra,

+ pls,

+ sp,

+ scales,

+ stats,

+ methods,

+ car,

+ grid,

+ reshape2,

+ agricolae,

+ emmeans,

+ nlme,

+ ggthemes,

+ ggdendro,

+ Rtsne

 RoxygenNote: 6.1.1

 Suggests: 

-    testthat,

-    covr,

-    knitr,

-    rmarkdown

+ testthat,

+ covr,

+ knitr,

+ rmarkdown

 Remotes: computational-metabolomics/pmp,

   computational-metabolomics/struct

 VignetteBuilder: knitr