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Releases: konradjk/loftee

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v.1.0.4 on GRCh38

v.1.0.4 on GRCh38 Latest
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@konradjk konradjk released this 17 Mar 13:09
v1.0.4_GRCh38
a46b502 
v1.0.4_GRCh38

Skip calculation of 50_BP_RULE and add NO_EXON_NUMBER flag if framesh…
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Added option to turn off splice prediction

Added option to turn off splice prediction

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@konradjk konradjk released this 09 Aug 12:54
v1.0.3
50c250e

run_splice_predictions:0

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v1.0.2

v1.0.2

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@konradjk konradjk released this 12 Feb 04:46
v1.0.2
3cf7d14 
false to 0
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Patch to allow skipping of LoF info

Patch to allow skipping of LoF info

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@konradjk konradjk released this 12 Feb 03:09
v1.0.1
835e21e 
v1.0.1

adding option to skip adding lof_info
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v1.0

v1.0

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@konradjk konradjk released this 07 Feb 15:21
v1.0
552ec46
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Version of LOFTEE used in Karczewski et al., 2019

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v0.3-beta

v0.3-beta Pre-release
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@konradjk konradjk released this 11 Feb 16:13
v0.3-beta
6a99f18

Splice module added, now filtering out splice variants in UTRs

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v0.2.2-beta

v0.2.2-beta Pre-release
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@konradjk konradjk released this 13 May 23:18
v0.2.2-beta
ebfa6d0

Default is fixed to only apply filters and flags to putative LoFs, not all variants (now need to add apply_all:true to do so)

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v0.2.1-beta

v0.2.1-beta Pre-release
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@konradjk konradjk released this 07 Apr 23:49
v0.2.1-beta
9b2f1a7

PhyloCSF data can now be read from MySQL instead of SQLite

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v0.2-beta

v0.2-beta Pre-release
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@konradjk konradjk released this 22 Jan 17:00
v0.2-beta
15b6719

Added conservation flags (PHYLOCSF_*), minor fixes to auxilliary scripts

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v0.1.1-beta

v0.1.1-beta Pre-release
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@konradjk konradjk released this 22 Jan 17:05
v0.1.1-beta
0fae58f

Bug fixes to v0.1 (VEP Plugin and auxiliary scripts)

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