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Pull requests: snakemake/snakemake-wrappers

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Pull requests list

feat: add fastaguard wrapper
#5436 opened Jul 3, 2026 by ehsanestaji Loading…
11 tasks done
3
perf: autobump bio/mehari/build-transcript-db/environment.yaml bio/mehari/build-transcript-db
#5426 opened Jul 3, 2026 by snakedeploy-bot Bot Loading…
perf: autobump bio/galah/environment.yaml bio/galah
#5423 opened Jul 3, 2026 by snakedeploy-bot Bot Loading…
chore(master): release 9.13.1 autorelease: pending
#5420 opened Jul 3, 2026 by snakemake-bot Contributor Loading…
1
feat: add mofaflex wrapper
#5388 opened Jun 21, 2026 by seneschall Contributor Loading…
6 of 7 tasks
30
perf: autobump wrappers in meta/bio/varscan2_snpeff/meta_wrapper.smk meta/bio/varscan2_snpeff
#5366 opened Jun 19, 2026 by snakedeploy-bot Bot Loading…
feat!: Update and refactor wrapper
#5353 opened Jun 17, 2026 by fgvieira Collaborator • Draft
7 tasks done
1
feat: Mageck mle
#5337 opened Jun 5, 2026 by tdayris Contributor Loading…
7 tasks done
3
feat: Mageck test
#5336 opened Jun 5, 2026 by tdayris Contributor Loading…
7 tasks done
19
docs: document wrapper interface conventions
#5310 opened May 26, 2026 by ehsanestaji Loading…
1
1
fix!: Switch token to an input file
#5302 opened May 21, 2026 by fgvieira Collaborator Loading…
7 tasks done
7
perf: autobump utils/nextflow/environment.yaml utils/nextflow
#5275 opened May 1, 2026 by snakedeploy-bot Bot Loading…
feat: add flye wrapper
#5265 opened Apr 24, 2026 by arog-bioinfo Contributor Loading…
7 tasks done
14
feat: crabz wrapper
#5247 opened Apr 23, 2026 by tdayris Contributor Loading…
7 tasks done
4
fix!: make star index output and star align input idx a multiext()
#5226 opened Apr 14, 2026 by dlaehnemann Member Loading…
7 tasks done
7
perf: autobump bio/transdecoder/longorfs/environment.yaml bio/transdecoder/longorfs
#5215 opened Apr 3, 2026 by snakedeploy-bot Bot Loading…
1
perf: autobump bio/transdecoder/predict/environment.yaml bio/transdecoder/predict
#5214 opened Apr 3, 2026 by snakedeploy-bot Bot Loading…
1
feat: add kraken2 wrappers (classify, build, add-to-library)
#5086 opened Mar 16, 2026 by warrok97ao Loading…
7 tasks done
62
perf: autobump bio/gatk/applybqsrspark/environment.yaml bio/gatk/applybqsrspark
#4977 opened Feb 20, 2026 by snakedeploy-bot Bot Loading…
feat: Add wrappers in bio/reference for Ensembl Genomes
#4882 opened Dec 23, 2025 by kbseah Loading…
7 tasks done
30
feat: announcement robot message and image
#4712 opened Nov 7, 2025 by cmeesters Member Loading…
5
perf: autobump bio/pyfastaq/replace_bases/environment.yaml bio/pyfastaq/replace_bases
#4707 opened Nov 7, 2025 by snakedeploy-bot Bot Loading…
2
perf: autobump bio/ngscheckmate/ncm/environment.yaml bio/ngscheckmate/ncm
#4705 opened Nov 7, 2025 by snakedeploy-bot Bot Loading…
1
feat: allow setting launchDir in params
#4638 opened Oct 9, 2025 by tedil Contributor Loading…
16
fix: Support both reference.dict and reference.fasta.dict in GRIDSS wrappers
#4426 opened Aug 19, 2025 by RitzelC Loading…
34
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