Open Source Python Data Management Systems

Avogadro is an advanced molecular editor designed for cross-platform use in computational chemistry, molecular modeling, bioinformatics, materials science and related areas. It offers a flexible rendering framework and a powerful plugin architecture.

FreeImage is a library project for developers who would like to support popular graphics image formats (PNG, JPEG, TIFF, BMP and others). Some highlights are: extremely simple in use, not limited to the local PC (unique FreeImageIO) and Plugin driven!

A data visualization and processing tool for scanning probe microscopy (SPM, i.e. AFM, STM, MFM, SNOM/NSOM, ...) and profilometry data, useful also for general image and 2D data analysis.

The General Mission Analysis Tool (GMAT) is an open-source tool for space mission design and navigation. GMAT is developed by a team of NASA, private industry, and public and private contributors. The GMAT development team is pleased to announce the release of GMAT version R2025a. For a complete list of new features, compatibility changes, and bug fixes, see the R2025a Release Notes in the Users Guide.

K-3D is the free (as in freedom) 3d modeling, animation, and rendering system.

Asymptote is a powerful descriptive vector graphics language for technical drawing, inspired by MetaPost but with an improved C++-like syntax. Asymptote provides for figures the same high-quality typesetting that LaTeX does for scientific text.

PySchool is a free and open-source Python distribution intended primarily for students who learn Python and data analysis, but it can also used by scientists, engineering, and data scientists. It includes more than 150 Python packages (full edition) including numpy, pandas, scipy, sympy, keras, scikit-learn, matplotlib, seaborn, beautifulsoup4...

TexGen is a geometric textile modelling software package to be used for obtaining engineering properties of woven textiles and textile composites. Citing TexGen We would be grateful if you could acknowledge use of TexGen where appropriate and suggest using one of the following references: L P Brown and A C Long. "Modelling the geometry of textile reinforcements for composites: TexGen", Chapter 8 in "Composite reinforcements for optimum performance (Second Edition)", ed. P Boisse, Woodhead Publishing Ltd, 2021, ISBN: 978-0-12-819005-0. https://doi.org/10.1016/B978-0-12-819005-0.00008-3 Lin, H., Brown, L. P. & Long, A. C. 2011. Modelling and Simulating Textile Structures using TexGen. Advanced Materials Research, 331, 44-47. To reference version 3.13.0 please use: Louise Brown, mike-matveev, & georgespackman. (2023). louisepb/TexGen: TexGen v3.13.1 (v3.13.1). Zenodo. https://doi.org/10.5281/zenodo.8221491

Matplotlib is a python library for making publication quality plots using a syntax familiar to MATLAB users. Matplotlib uses numpy for numerics. Output formats include PDF, Postscript, SVG, and PNG, as well as screen display. As of matplotlib version 1.5, we are no longer making file releases available on SourceForge. Please visit http://matplotlib.org/users/installing.html for help obtaining matplotlib.

PLplot is a cross-platform, scientific graphics plotting library that supports math symbols and human languages (via UTF-8 user input strings); plot capabilities for multiple non-interactive plot file formats and in multiple interactive environments; and bindings for multiple computer languages.

GPlates is a plate-tectonics program. Manipulate reconstructions of geological and paleo-geographic features through geological time. Interactively visualize vector, raster and volume data. PyGPlates is the GPlates Python library. Get fine-grained access to GPlates functionality in your Python scripts.

GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.

LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone.

A Python interface to the gnuplot plotting program.

The Open-Source PyMOL repository has been moved to github: https://github.com/schrodinger/pymol-open-source We still use the pymol-users mailing list here on sourceforge. Please subscribe for community support: https://pymol.org/maillist (Note: SourceForge email newsletter and special offers are optional and can be unchecked) The PyMOL community wiki has its own home: https://pymolwiki.org/

RPy is a very simple, yet robust, Python interface to the R Programming Language. It can manage all kinds of R objects and can execute arbitrary R functions (including the graphic functions).

XCSoar is a tactical glide computer for Android, Linux, macOS, and Windows.

GEOMS2 is a geostatistics and geosciences modeling software. Provides interface for grid (mesh), point, surface and data (non-spatial) objects. It has a 3D viewer and 2D plots using the well known Python engines Mayavi and Matplotlib. It has several functions to manipulate your data as well as provide univariate and multivariate analysis. NOTE: The software is still an early beta. Please tell us if you found a bug. Download datasets for students of Geostatistics 2017 (Petroleum Engineering): https://sourceforge.net/projects/geoms2/files/Geostatistics_Petroleum.zip/download Download datasets for students of Geostatistics 2017 (Geology and Mining Engineering): https://sourceforge.net/projects/geoms2/files/Geostatistics_Mining.zip/download Old: http://sourceforge.net/projects/geoms2/files/SETS_geoestatistica2_2015.7z/download https://sites.google.com/site/cmrpsoftware/downloads/Quarry_sets.7z?attredirects=0&d=1 http://sourceforge.net/projects/geoms2/files/Mining.7z/download

Released August 22, 2013 Lubuntu Blends: Biochemistry 13.04 (Raring) v5.44 Linux Kernel Image 3.8.0-29 Lubuntu Blends are pre-installed Wubi disk image remixes of Ubuntu and Debian Science meta packages, A custom boot loader allows installations to be copied and automatically booted from most external or USB flash drives. Once up and running, use earlier Lubuntu Remix README instructions here until documentation is updated. https://sourceforge.net/projects/portable-linux/files/ Installation 1. Download the Wubi installer http://releases.ubuntu.com/saucy/wubi.exe 2. Install any flavor of Ubuntu. 3. Swap out the root.disk with the ones provided here. Overview LAMP stack running on localhost (127.0.0.1). Scientific, productivity & media packages include R (Rattle Data Miner), GridEngine, Condor, cooperative computing tools, WINE, LibreOffice, Evolution, Clinica, Neuro Debian Desktop, PsycoPy, OpenVibe, 3DSlicer, Paraview, Openshot. Cheers, Gregory Remington

MayaVi is a free, cross platform, easy to use scientific data visualizer. It provides a GUI to ease the visualization process, is written in Python and uses the Visualization Toolkit (VTK) for the graphics.

BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.

g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices.

AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.

LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools

Ubix stands for Universal Business Intelligence Computing System. Ubix Linux is an open-source, Debian-based Linux distribution geared towards data acquisition, transformation, analysis and presentation. Ubix Linux purpose is to offer a tiny but versatile datalab. Ubix Linux is easily accessible, resource-efficient and completely portable on a simple USB key. Ubix Linux is a perfect toolset for learning data analysis and artificial intelligence basics on small to medium datasets. You can find additional information, technical guidance, and user credentials on the project website https://ubix-linux.sourceforge.io/ or on the project subreddit https://reddit.com/r/UbixLinux.