Open Source Protocols

BioNotate is an open-source web-based tool for the collaborative and distributed annotation of biomedical text with entities and facts of interest.

Decision support tool that assesses breast cancer risk and identifies risk-reducing interventions. Includes web service implementations of established models -- BRCAPRO, Gail, Claus, BCSC Density -- for calculating breast cancer risk.

PySCeS CBMPy is a new platform for constraint based modelling and analysis. It has been designed using principles developed in the PySCeS simulation software project: usability, flexibility and accessibility. CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations. Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently translating these into the underlying mathematical structures. . CBMPy implements popular analyses such as FBA, FVA, element/charge balancing, network analysis and model editing as well as advanced methods developed for the ecosystem modelling. CBMPy supports user interaction via: - interactive console or as a library for advanced use - GUI, visual representation of the model, analysis methods - a SOAP based webAPI exposes high level functionality via web services

A consumer API that can process the response of an ontology evaluation web service provider.

EdgeExpressDB (eeDB) is a federated data abstraction system designed for integrating, interpreting, and visualizing very large biology datasets. It is designed for scaling beyond Petabytes and 10^13 objects. http://fantom.gsc.riken.jp/4/edgeexpress

HadStat is service on the cloud, allow you to analysis the data on the cloud and return the result in nice graph,this service is free, you can redistribute it and/or modify it under the terms of the GNU General Public License. this service using many technologies , like Hadoop mapreduce, HTML, PHP, Web Service applications, linux server, java, eclipse IDE, with many indicators:Simple moving average (SMA),Exponential moving average (EMA),Smoothed simple moving average (SMMA),Linear weighted moving average (LWMA )on DATA from NYSE daily prices.....

The HealthQuilt project is a collection of Health Information tools released by the HealthQuilt team. This tools include CCR tools, as well as tools to improve the quality and coordination of healthcare.

Integrate the power of the fully AJAX enabled technology of ICEfaces into the framework of the ESRI WebADF. No need to code in Javascript or to handle XML communication to build AJAX functionalities. OnlineDemo: http://www2.pch.etat.lu/pchViewer

Jitterbit is an open source integration tool that delivers a quick and simple way to design, configure, test, and deploy integration solutions. It supports many document types and protocols: XML, web services, database, LDAP, text, FTP, HTTP(S), file

MMI - Tethys is a framework to facilitate interoperability among environmental systems. It facilitates creation of metadata, data and Web Services following standards. It is currently based on JAVA, AXIS and ANT.

Create geographics maps from data in table format. Serve map creation requests using a XML-RPC server. - Requires: mapnik, swftools, MySQL server and MySQLdb python module.

MOVED: http://code.google.com/p/rssfilter/ Selects and/or rejects articles from RSS feeds based on keywords you supply. Runs in your taskbar! Originally intended to filter new content from scientific journals such as PRL or the arxiv (cond-mat, etc)

RTAI-XML is a server component of the Real Time Application Interface (RTAI) project, implementing a service oriented way to design and develop Real Time (RT) control applications.

SimpleWFS is a 100% Java servlet implementation of the draft OGC standard Web Feature Service (WFS) Simple. This is a Web service interface whose goal is to specify a common, minimal feature set for geospatial-temporal data access.

An HTTP and XML-RPC server for Matlab Simulink

The Time Series Toolbox is a set of software components that simplify the task of building applications that record, process, store and publish time series of observations. Current main application area are sensor networks.

Weather Data Miner is a PHP/SOAP service that caches weather data in a MySQL database. The data can then be accessed by any SOAP client to obtain weather information of a weather station. Currently supports Australian and major world city station data.

Webtunnel is an HTTP tunnel with some unique features: it runs in the context of a web server; it uses simple requests/responses for proxy traversal; and it is multi-threaded to allow many parallel connections to many destinations simultaneously.

Exows extends the capabilities of the OWS (OGC Web Services). It enables the multilingualism functionalities for OWS (INSPIRE compliant) and allows complex features schemas for WFS and WMS getFeatureInfo (GML). It was developed by BRGM in OneGeology and was continued by BRGM in EUROGEOSS.

Memomics Forge is a meta-project for software that utilizes the Memomics Semantic Service. Memomics Semantic Service provides semantic data which can be embedded in applications via webservices.

soaPDB is a clean way to Search, Organize, and get e-mail Alerts for saved PDB (Protein Data Bank) queries

solargrapher is a minimalistic implementation of the ComLynx protocol, spoken by solar inverters made by Danfoss, IBC Solar et al. It logs whatever data you deem interesting in rrd file and has a minimal example on how to produce graphs for a cgi-enables webserver from that.