Showing 9 open source projects for "microscopes"

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  • 1
    Iris

    Iris

    2-photon scanning software

    Iris is a LabVIEW package, developed at the Keller Lab (Basel FMI), for running 2-photon microscopes. It is supplied with auxiliary software for recording additional experimental parameters, such as behavioral states. Iris is freely available. You may modify it as you wish and use it as you wish, so long as you comply with the licence terms (see below). However, please note that we are **unable to offer any guarantee of support**.
    Downloads: 1 This Week
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  • 2
    EBSP Indexer

    EBSP Indexer

    GUI for processing and indexing EBSP from SEMs

    EBSP Indexer is a graphical user interface that allows for processing and indexing of Electron backscatter patterns which are generated by scanning electron microscopes. Its goal is to make the rich functionality of the open-source library kikuchipy more accessible to users, without requiring knowledge of python or the library itself. Contribute by using our DOI: https://zenodo.org/record/7925262
    Downloads: 0 This Week
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  • 3
    MicroMos

    MicroMos

    To automatically obtain mosaics of partially overlapping images.

    ...Journal of Materials Science: Materials in Medicine, 25(10):2395-2410, October 2014. 2) F. Piccinini, A. Bevilacqua, E. Lucarelli, Automated image mosaics by non-automated light microscopes: the MicroMos software tool. Journal of Microscopy, 252(3):226-250, December 2013.
    Downloads: 0 This Week
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  • 4

    Automatic cell lineage reconstruction

    Automatic segmentation and tracking for 3D time-lapse microscopy

    ...We demonstrate its (1) generality, by reconstructing cell lineages in four-dimensional, terabyte-sized image data of fruit-fly, zebrafish and mouse embryos, acquired with three different types of fluorescence microscopes, (2) scalability, by analyzing advanced stages of development with up to 20,000 cells per time point, at 26,000 cells min-1 on a single computer workstation, and (3) ease of use, by adjusting only two parameters across all data sets and providing visualization and editing tools for efficient data curation. Our approach achieves on average 97.0% linkage accuracy across all species and imaging modalities." ...
    Downloads: 0 This Week
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    Subcontractor Construction Management Software

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  • 5
    Acquisition software for electron microscopes. Runs on FEI Tecnai and Titan microscopes and is usable in material and life science applications
    Downloads: 0 This Week
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  • 6

    LS-PIV Supplemental Material

    Line-scanning particle image velocimetry for analyzing blood flow data

    Line-scanning particle image velocimetry (LS-PIV) is an analytical method to quantify blood velocity data generated by many confocal and two-photon excited fluorescence microscopes. We hope that this method will be of use to the research community! The associated files include Matlab code for LS-PIV and example data-sets of measured blood flow in the cerebral cortex of mouse. For additional information, please see the manuscript "Line-Scanning Particle Image Velocimetry: an Optical Approach for Quantifying a Wide Range of Blood Flow Speeds in Live Animals" by Tyson N. ...
    Downloads: 0 This Week
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  • 7
    The virtual lab is a NASA-funded project to provide simulated instrumentation. ITG has developed a Virtual Microscope (Virtual SEM and LM) for viewing high-resolution, multi-dimensional image datasets. More info and data: http://virtual.itg.uiuc.edu
    Downloads: 2 This Week
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  • 8
    Bumblebee Instrument Management System
    Equipment/instrumentation booking and usage accounting system. Designed primarily for use in academic laboratories where a number of users share a set of instruments (e.g. NMR machines, microscopes, fume hoods).
    Downloads: 0 This Week
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  • 9
    Computer Controlled Optical Microscopy is a package to enable camera equipped microscopes to generate multi-modal time-lapse image sequences of 3D volumes. This is achieved by periodically changing optical settings, xyz positions and acquiring images.
    Downloads: 0 This Week
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