Bioconductor Code: pipeComp

Graph of pipeComp

8ae56d1 (HEAD -> devel, origin/devel, origin/HEAD) bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:03:57 -0400;
151589a (origin/RELEASE_3_21, RELEASE_3_21) bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 12:03:57 -0400;
be750ef (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:48:04 -0400;
32e4073 (origin/RELEASE_3_20, RELEASE_3_20) bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 10:48:04 -0400;
1356fef bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:25:00 -0400;
ca9f09f (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:25:00 -0400;
163898b bump x.y.z version to odd y following creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:23:19 -0400;
b567066 (origin/RELEASE_3_18, RELEASE_3_18) bump x.y.z version to even y prior to creation of RELEASE_3_18 branch by J Wokaty <[email protected]> 2023-10-24 11:23:19 -0400;
daf9e04 bump x.y.z version to odd y following creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:20:15 -0400;
99e9a4c (origin/RELEASE_3_17, RELEASE_3_17) bump x.y.z version to even y prior to creation of RELEASE_3_17 branch by J Wokaty <[email protected]> 2023-04-25 11:20:15 -0400;
f109354 bump x.y.z version to odd y following creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:22:20 -0400;
964a400 (origin/RELEASE_3_16, RELEASE_3_16) bump x.y.z version to even y prior to creation of RELEASE_3_16 branch by J Wokaty <[email protected]> 2022-11-01 11:22:20 -0400;
e80f68f bump x.y.z version to odd y following creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:06:18 +0000;
1ed6a6d (origin/RELEASE_3_15, RELEASE_3_15) bump x.y.z version to even y prior to creation of RELEASE_3_15 branch by Nitesh Turaga <[email protected]> 2022-04-26 16:06:18 +0000;
b60d48b bump x.y.z version to odd y following creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 17:00:42 +0000;
79b7c02 (origin/RELEASE_3_14, RELEASE_3_14) bump x.y.z version to even y prior to creation of RELEASE_3_14 branch by Nitesh Turaga <[email protected]> 2021-10-26 17:00:42 +0000;
7c4eb6e bump x.y.z version to odd y following creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:53:31 +0000;
b8a4bed (origin/RELEASE_3_13, RELEASE_3_13) bump x.y.z version to even y prior to creation of RELEASE_3_13 branch by Nitesh Turaga <[email protected]> 2021-05-19 16:53:31 +0000;
a987e58 added missing rmarkdown suggest by plger <[email protected]> 2021-04-19 18:03:46 +0200;
47edac4 Merge branch 'master' of git.bioconductor.org:packages/pipeComp by plger <[email protected]> 2021-04-19 18:02:57 +0200;
d56ebbe version bump by Pierre-Luc <[email protected]> 2021-01-28 09:14:22 +0100;
c688426 updated to accept new scater qc names by Pierre-Luc <[email protected]> 2021-01-28 09:13:59 +0100;
c8616bc updated documentation by Pierre-Luc Germain <[email protected]> 2020-10-29 11:56:29 +0100;
6d55ff0 Merge remote-tracking branch 'upstream/RELEASE_3_12' by Pierre-Luc Germain <[email protected]> 2020-10-29 11:55:40 +0100;
f5a2ab8 bump x.y.z version to odd y following creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 11:58:26 -0400;
6539449 (origin/RELEASE_3_12, RELEASE_3_12) bump x.y.z version to even y prior to creation of RELEASE_3_12 branch by Nitesh Turaga <[email protected]> 2020-10-27 11:58:26 -0400;
28b99b1 fixed dim drop problem with single dataset by Pierre-Luc Germain <[email protected]> 2020-09-11 11:47:58 +0200;
fe7e43e fixed missing parenthesis by Pierre-Luc Germain <[email protected]> 2020-09-11 11:47:34 +0200;
21893fe evaluateDimRed in absence of covars by Pierre-Luc <[email protected]> 2020-09-11 08:46:27 +0200;
67a8102 Merge branch 'master' of github.com:plger/pipeComp by Pierre-Luc Germain <[email protected]> 2020-09-09 11:09:42 +0200;
38fd1f4 updated citation by Pierre-Luc Germain <[email protected]> 2020-09-09 11:08:49 +0200;
eeb2ce8 changed vignette links to BioC by Pierre-Luc <[email protected]> 2020-09-09 10:02:25 +0200;
b73c240 fixed build warning by Pierre-Luc Germain <[email protected]> 2020-09-08 08:58:51 +0200;
03eb6a4 fixed missing lib in example by Pierre-Luc Germain <[email protected]> 2020-09-06 09:15:56 +0200;
5297b7c added mention about R<4 by Pierre-Luc Germain <[email protected]> 2020-09-04 13:47:48 +0200;
3743547 version bump by Pierre-Luc Germain <[email protected]> 2020-09-04 13:43:44 +0200;
a61232f added distinction of wrappers and step functions by Pierre-Luc Germain <[email protected]> 2020-09-04 13:42:03 +0200;
eea8e10 fixed length>1 coerved to logical by Pierre-Luc Germain <[email protected]> 2020-09-04 13:40:10 +0200;
fd36664 updated evaluateClustering to handle NAs by Pierre-Luc Germain <[email protected]> 2020-09-04 13:39:10 +0200;
bbbbc02 Merge branch 'R3.6' into master by Pierre-Luc <[email protected]> 2020-09-04 13:23:17 +0200;
4a90b1c updated paper URL to final version by Pierre-Luc <[email protected]> 2020-09-02 12:00:54 +0200;
790ebc8 Update pipeComp.Rmd by Pierre-Luc <[email protected]> 2020-09-02 11:59:44 +0200;
a6e9ce0 Update README.md by Pierre-Luc <[email protected]> 2020-09-02 11:57:38 +0200;
31d7735 fixed upcoming length > 1 in coercion to logical by Pierre-Luc Germain <[email protected]> 2020-09-02 11:37:45 +0200;
5872616 updated evaluateClustering to handle NA true labels by Pierre-Luc Germain <[email protected]> 2020-09-02 10:44:41 +0200;
a556cd4 attempt to fix BBC build error by Pierre-Luc Germain <[email protected]> 2020-08-17 16:48:11 +0200;
db82165 version bump by Pierre-Luc Germain <[email protected]> 2020-08-11 17:50:52 +0200;
f75036e Merge pull request <a href="#46">#46</a> from ansonrel/master by Pierre-Luc <[email protected]> 2020-08-11 17:48:25 +0200;
554a0cf re-add .dsMergeResults by Thony <[email protected]> 2020-08-11 16:59:10 +0200;
5d98c8f Merge pull request <a href="#10">#10</a> from plger/master by ansonrel <[email protected]> 2020-08-11 16:36:52 +0200;
6106435 Merge pull request <a href="#45">#45</a> from plger/add-license-1 by Pierre-Luc <[email protected]> 2020-08-07 17:43:02 +0200;
ed02159 Create LICENSE by Pierre-Luc <[email protected]> 2020-08-07 17:42:20 +0200;
1abf067 version bump by Pierre-Luc Germain <[email protected]> 2020-08-07 17:30:21 +0200;
f944d7c fixed typos by Pierre-Luc Germain <[email protected]> 2020-08-07 17:30:15 +0200;
201153e added pointsize argument by Pierre-Luc Germain <[email protected]> 2020-08-07 17:29:43 +0200;
a53b034 Update README.md by Pierre-Luc <[email protected]> 2020-08-07 17:28:34 +0200;
6cef431 added missing man entry and version bump for bioc by Pierre-Luc Germain <[email protected]> 2020-08-03 17:41:17 +0200;
fc4d235 added MCVR wrappers by Pierre-Luc Germain <[email protected]> 2020-08-03 17:40:05 +0200;
969f6af Merge pull request <a href="#44">#44</a> from ansonrel/master by Pierre-Luc <[email protected]> 2020-07-23 16:12:27 +0200;
dff7872 Bugfix of scrna_evalPlot_overall when rowAnnoColors=NULL by Thony <[email protected]> 2020-07-23 15:34:14 +0200;
188ccca Merge pull request <a href="#9">#9</a> from plger/master by ansonrel <[email protected]> 2020-07-22 17:51:27 +0200;
55acf1b Merge pull request <a href="#42">#42</a> from plger/devel by Pierre-Luc <[email protected]> 2020-07-20 09:46:28 +0200;
807cba7 fixed missing import, updated news by Pierre-Luc Germain <[email protected]> 2020-07-20 09:42:15 +0200;
45e1cf0 Merge pull request <a href="#41">#41</a> from plger/devel by Pierre-Luc <[email protected]> 2020-07-20 09:27:45 +0200;
25bb163 updated documentation by Pierre-Luc Germain <[email protected]> 2020-07-20 09:26:04 +0200;
f4525fa updated documentation by Pierre-Luc Germain <[email protected]> 2020-07-18 12:11:49 +0200;
11ad52a added option to continue run despite errors by Pierre-Luc Germain <[email protected]> 2020-07-18 12:08:55 +0200;
e7f5a79 added overall plot for scRNA pipeline by Pierre-Luc Germain <[email protected]> 2020-07-18 11:59:48 +0200;
ac47448 moved clustering evaluation outside the step function, setting true labels as attribute by Pierre-Luc Germain <[email protected]> 2020-07-18 11:58:45 +0200;
1a223de manual page for stableG by Pierre-Luc Germain <[email protected]> 2020-07-18 11:57:12 +0200;
9bc3c53 added list of stable genes used in the paper by Pierre-Luc Germain <[email protected]> 2020-07-14 09:22:06 +0200;
ffff273 Merge pull request <a href="#40">#40</a> from ansonrel/master by Pierre-Luc <[email protected]> 2020-07-03 12:59:23 +0200;
94658a7 update scVI wrappers + add latent by Thony <[email protected]> 2020-06-30 18:30:05 +0200;
150bc20 Merge pull request <a href="#8">#8</a> from plger/master by ansonrel <[email protected]> 2020-06-30 18:08:45 +0200;
a39e43f fixed wrong class conversion of rowData by Pierre-Luc Germain <[email protected]> 2020-06-22 17:00:07 +0200;
ff087a8 Merge pull request <a href="#39">#39</a> from plger/devel by Pierre-Luc <[email protected]> 2020-06-18 15:47:55 +0200;
16f7653 added overall plot function for scrna_pipeline by Pierre-Luc Germain <[email protected]> 2020-06-18 15:34:07 +0200;
e60268d Merge pull request <a href="#38">#38</a> from plger/devel by Pierre-Luc <[email protected]> 2020-06-09 16:40:34 +0200;
9f874f6 added build_vignettes to install by Pierre-Luc Germain <[email protected]> 2020-06-09 16:39:41 +0200;
34e5c2a fixed broken fn references by Pierre-Luc Germain <[email protected]> 2020-06-09 16:38:40 +0200;
522f2f8 version bump by Pierre-Luc Germain <[email protected]> 2020-06-09 13:45:40 +0200;
fe3dfec fixed bug due to new dplyr behaviour by Pierre-Luc Germain <[email protected]> 2020-06-09 13:45:09 +0200;
aff573a fixed Misc change in Seurat by Pierre-Luc Germain <[email protected]> 2020-06-09 10:36:52 +0200;
e81d692 fixed deprecated scater::normalize by Pierre-Luc Germain <[email protected]> 2020-06-09 09:36:26 +0200;
9314407 Merge pull request <a href="#37">#37</a> from plger/devel by Pierre-Luc <[email protected]> 2020-06-02 10:55:07 +0200;
7d2fd7d version bump by Pierre-Luc Germain <[email protected]> 2020-06-02 10:54:37 +0200;
2f17e5d Merge pull request <a href="#36">#36</a> from plger/devel by Pierre-Luc <[email protected]> 2020-06-02 08:58:48 +0200;
e531a09 version bump by Pierre-Luc Germain <[email protected]> 2020-06-02 08:57:48 +0200;
597fd8e updated link by Pierre-Luc <[email protected]> 2020-05-28 11:06:01 +0200;
5745e00 version bump by Pierre-Luc Germain <[email protected]> 2020-05-19 18:36:04 +0200;
eb0c0a5 reverted back R requirement to 3.6.1 by Pierre-Luc <[email protected]> 2020-05-19 09:41:31 +0200;
421f6fc Merge pull request <a href="#35">#35</a> from plger/master by Pierre-Luc <[email protected]> 2020-05-19 09:40:44 +0200;
3389989 Merge branch 'R3.6' into master by Pierre-Luc <[email protected]> 2020-05-19 09:40:32 +0200;
f566a33 Merge pull request <a href="#34">#34</a> from plger/devel by Pierre-Luc <[email protected]> 2020-05-15 12:27:21 +0200;
8f9af65 version bump by Pierre-Luc Germain <[email protected]> 2020-05-15 09:04:58 +0200;
3f104be Merge pull request <a href="#33">#33</a> from plger/devel by Pierre-Luc <[email protected]> 2020-05-14 13:56:46 +0200;
86023f6 fixed heatmap label colors by Pierre-Luc Germain <[email protected]> 2020-05-13 18:29:35 +0200;
a3f2acd version bump by Pierre-Luc Germain <[email protected]> 2020-05-12 18:41:22 +0200;
68327fe removed data.table dependency by Pierre-Luc Germain <[email protected]> 2020-05-12 18:40:58 +0200;
3d00edb Merge pull request <a href="#32">#32</a> from plger/devel by Pierre-Luc <[email protected]> 2020-05-12 16:37:59 +0200;