Bioconductor Code: singleCellTK

Graph of singleCellTK

f519d00e (origin/RELEASE_3_21, RELEASE_3_21) Version bump by Josh Campbell <[email protected]> 2025-07-01 15:40:07 -0400;
565145a1 (HEAD -> devel, origin/devel, origin/HEAD) version bump by Josh Campbell <[email protected]> 2025-07-01 15:36:15 -0400;
29202814 Merge remote-tracking branch 'compbiomed/devel' into devel by Josh Campbell <[email protected]> 2025-07-01 15:33:49 -0400;
c6ae37dc Merge remote-tracking branch 'bioc/devel' into devel by Josh Campbell <[email protected]> 2025-06-23 15:49:59 -0400;
50e8b51c version bump by Josh Campbell <[email protected]> 2025-06-23 15:45:09 -0400;
ae7067b6 Merge pull request <a href="#787">#787</a> from salzcamino/master by Joshua D. Campbell <[email protected]> 2025-06-23 15:39:21 -0400;
f9253252 update runEnrichR examples by salzcamino <[email protected]> 2025-06-23 10:16:35 -0400;
2a13bfd3 Merge branch 'compbiomed:master' into master by Salam AlAbdullatif <[email protected]> 2025-05-14 11:23:33 -0400;
6723890f Updated news and docs by Josh Campbell <[email protected]> 2025-05-06 18:08:09 -0400;
730a5f91 Merge pull request <a href="#48">#48</a> from compbiomed/devel by Salam AlAbdullatif <[email protected]> 2025-04-23 10:41:52 -0400;
babb4c4c Merge branch 'RELEASE_3_21' into devel by Josh Campbell <[email protected]> 2025-04-21 19:18:49 -0400;
a5892356 Merge remote-tracking branch 'compbiomed/devel' into devel by Josh Campbell <[email protected]> 2025-04-21 19:17:58 -0400;
91539d51 bump x.y.z version to odd y following creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 13:34:17 -0400;
e453fa19 bump x.y.z version to even y prior to creation of RELEASE_3_21 branch by A Wokaty <[email protected]> 2025-04-15 13:34:17 -0400;
a2b0e098 Merge pull request <a href="#786">#786</a> from salzcamino/master by Joshua D. Campbell <[email protected]> 2025-04-09 20:05:18 -0400;
02390113 runScDblFinder seed by Salam AlAbdullatif <[email protected]> 2025-04-09 12:26:04 -0400;
ecffb8ae version bump by Josh Campbell <[email protected]> 2025-04-02 11:58:51 -0400;
eeda1ca9 Merge pull request <a href="#784">#784</a> from salzcamino/master by Joshua D. Campbell <[email protected]> 2025-03-29 12:04:50 -0400;
f653da45 importGeneSetsFromMsigDB documentation update by Salam AlAbdullatif <[email protected]> 2025-03-27 15:45:42 -0400;
632fdbb5 Update importGeneSets.R by Salam AlAbdullatif <[email protected]> 2025-03-26 13:08:52 -0400;
b30b317e version bump by Josh Campbell <[email protected]> 2025-02-20 17:11:54 -0500;
b4c3146f Updated runBarcodeRanks() to match output from new DropletUtils update by Josh Campbell <[email protected]> 2025-02-20 17:11:04 -0500;
974ed6bd Merge remote-tracking branch 'bioc/devel' into devel by Josh Campbell <[email protected]> 2025-02-16 17:07:25 -0500;
e7e94ca1 (origin/RELEASE_3_20, RELEASE_3_20) Version bump, updated docs by Josh Campbell <[email protected]> 2025-02-13 11:47:56 -0500;
cc7b739f updated dplyr function to use everything() to select all cols. Was causing an error in the Heatmap.Rmd article by Josh Campbell <[email protected]> 2025-02-13 09:06:39 -0500;
17738106 Updated LICENSE. Updated plotSeuratElbow docs, updated plotSeuratElbow unit test. Updated by Josh Campbell <[email protected]> 2025-02-12 19:42:09 -0500;
8fd41485 Merge remote-tracking branch 'bioc/RELEASE_3_20' into devel by Josh Campbell <[email protected]> 2025-02-12 08:00:43 -0500;
0865bfbf Merge remote-tracking branch 'compbiomed/devel' into devel by Josh Campbell <[email protected]> 2025-02-12 07:51:31 -0500;
d5026da5 Set default interactive to FALSE for plotSeuratElbow by Josh Campbell <[email protected]> 2025-02-12 07:50:51 -0500;
c60e155c Merge pull request <a href="#777">#777</a> from mingl1997/devel by Joshua D. Campbell <[email protected]> 2025-01-14 16:32:49 -0500;
a312b977 fixed decontX/soupX webapp error by mingl1997 <[email protected]> 2025-01-14 13:02:37 -0500;
e4883478 Merge pull request <a href="#32">#32</a> from compbiomed/devel by mingl1997 <[email protected]> 2025-01-07 11:01:40 -0500;
a57001ec addressed do.call issue by mingl1997 <[email protected]> 2025-01-07 10:59:57 -0500;
65dee790 (origin/master) bump x.y.z version to odd y following creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:30:33 -0400;
6bbe76fe bump x.y.z version to even y prior to creation of RELEASE_3_20 branch by J Wokaty <[email protected]> 2024-10-29 11:30:33 -0400;
6557272f Merge pull request <a href="#772">#772</a> from Ashastry2/devel by Joshua D. Campbell <[email protected]> 2024-10-28 12:38:33 -0400;
87a7fb08 Merge pull request <a href="#31">#31</a> from compbiomed/devel by mingl1997 <[email protected]> 2024-10-28 12:00:42 -0400;
0d1d468f Fixes NAMESPACE error by Ashastry2 <[email protected]> 2024-10-28 10:44:55 -0400;
c77ca3bd Merge branch 'compbiomed:devel' into devel by Amulya Shastry <[email protected]> 2024-10-28 10:25:59 -0400;
45a8204a Fixes notes about DataFrame by Ashastry2 <[email protected]> 2024-10-28 10:14:25 -0400;
e4051af9 Merge pull request <a href="#770">#770</a> from Ashastry2/devel by Joshua D. Campbell <[email protected]> 2024-10-28 08:47:12 -0400;
52401f5c Merge pull request <a href="#771">#771</a> from mingl1997/devel by Joshua D. Campbell <[email protected]> 2024-10-28 07:57:37 -0400;
9665aefb changed description file (redundant tidyr import) by mingl1997 <[email protected]> 2024-10-25 15:21:08 -0400;
d3ae56ca updated wordlist to remove spelling note by mingl1997 <[email protected]> 2024-10-25 15:17:56 -0400;
3b5bd69e Vignette shows cellSummary example by Ashastry2 <[email protected]> 2024-10-24 13:47:15 -0400;
50173421 Updates documentation and vignette to show changes to plotSCEHeatmap function Fixes notes about namespace by Ashastry2 <[email protected]> 2024-10-24 12:14:41 -0400;
7232c564 Merge pull request <a href="#30">#30</a> from compbiomed/devel by mingl1997 <[email protected]> 2024-10-23 11:10:40 -0400;
d91daa2a Merge branch 'master' into devel by Josh Campbell <[email protected]> 2024-10-22 16:02:12 -0400;
b825433c Merge remote-tracking branch 'compbiomed/devel' into devel by Josh Campbell <[email protected]> 2024-10-21 21:39:56 -0400;
bbdef018 version bump by Josh Campbell <[email protected]> 2024-10-21 21:39:53 -0400;
21e2eb4d Merge pull request <a href="#769">#769</a> from Ashastry2/master by Joshua D. Campbell <[email protected]> 2024-10-21 21:16:02 -0400;
6bd11f68 Merge pull request <a href="#768">#768</a> from irzamsarfraz/devel by Joshua D. Campbell <[email protected]> 2024-10-21 21:15:29 -0400;
6155f27b Multiple bug fixes by irzamsarfraz <[email protected]> 2024-10-21 14:25:39 -0400;
fb16476f Merge branch 'compbiomed:master' into master by Amulya Shastry <[email protected]> 2024-10-21 13:33:07 -0400;
c8ad6f9e Fixes warnings and NOTES by Ashastry2 <[email protected]> 2024-10-21 13:30:29 -0400;
ac622d4a Merge pull request <a href="#29">#29</a> from compbiomed/devel by mingl1997 <[email protected]> 2024-10-21 12:38:42 -0400;
cebf8f20 Merge pull request <a href="#767">#767</a> from akshayarav/devel by Joshua D. Campbell <[email protected]> 2024-10-20 09:00:49 -0400;
df280022 Changed image qc_run.png to match shiny gui, removed mitochondrial gene set option from image by Akshay Aravind <[email protected]> 2024-10-19 13:30:57 -0400;
d3927166 Merge pull request <a href="#766">#766</a> from Ashastry2/master by Joshua D. Campbell <[email protected]> 2024-10-15 13:39:24 -0700;
5e61251f Fixes the do.call paste error by Ashastry2 <[email protected]> 2024-10-08 13:48:49 -0400;
564536f5 Remove lines used for testing by Ashastry2 <[email protected]> 2024-10-08 12:32:02 -0400;
e0118356 Fixing colData error by Ashastry2 <[email protected]> 2024-10-08 11:59:34 -0400;
d0de801e fix heatmap bug by Ashastry2 <[email protected]> 2024-10-07 20:01:27 -0400;
658c2dbd "update to fix issues with old commit" by Ashastry2 <[email protected]> 2024-10-07 19:54:33 -0400;
3733c155 fixing by Ashastry2 <[email protected]> 2024-10-07 19:48:49 -0400;
c37f062a added back plotSCEHeatmap by Ashastry2 <[email protected]> 2024-10-07 19:35:19 -0400;
835f89d7 remove unwanted music files by Ashastry2 <[email protected]> 2024-10-07 17:13:12 -0400;
fb78e682 Revert "Revert "fixes check fails"" by Ashastry2 <[email protected]> 2024-10-07 16:45:45 -0400;
59c66305 removing unwanted files that accidentally got merged by Ashastry2 <[email protected]> 2024-10-07 16:40:53 -0400;
b28f2c41 Revert "fixes check fails" by Ashastry2 <[email protected]> 2024-10-07 16:21:07 -0400;
d8d584ed Merge branch 'master' of github.com:Ashastry2/singleCellTK by Ashastry2 <[email protected]> 2024-10-07 16:13:35 -0400;
906714fc Merge remote-tracking branch 'bioc/devel' into devel by Josh Campbell <[email protected]> 2024-10-04 07:29:25 -0400;
b8d317f1 Merge pull request <a href="#765">#765</a> from mingl1997/devel by Joshua D. Campbell <[email protected]> 2024-09-04 08:43:43 -0400;
4ad9ec1c fixed missing comma in description file by Ming Liu <[email protected]> 2024-08-28 19:23:16 -0400;
9436688f Merge pull request <a href="#28">#28</a> from compbiomed/devel by mingl1997 <[email protected]> 2024-08-28 18:00:14 -0400;
ff01a6ad Merge branch 'devel' into devel by mingl1997 <[email protected]> 2024-08-28 17:59:57 -0400;
2ae06c9f fixed some more documentation errors by Ming Liu <[email protected]> 2024-08-28 15:59:36 -0400;
8182ec4f added more memory in global options to code examples crashing by Ming Liu <[email protected]> 2024-08-27 17:16:53 -0400;
9a95941d fixed documentation slashes going the wrong way by Ming Liu <[email protected]> 2024-08-27 14:49:51 -0400;
40527afd Merge pull request <a href="#764">#764</a> from Ashastry2/master by Joshua D. Campbell <[email protected]> 2024-08-27 13:32:39 -0400;
81329383 fixes check fails - removed "cluster_rows" and "cluster_cols" options as they are no longer options for plotSCEHeatmap. - added if/else switch for ordering heatmap by PCs. PC ordering only happens if useAssay is reducedDim - updated name for palette to make it compatible with previous versions. by Ashastry2 <[email protected]> 2024-08-26 20:40:18 -0400;
d3a92f02 Updates - - New palette option for heatmap - New scaling options - Reorders matrix by PC - Column summary barplots by Ashastry2 <[email protected]> 2024-08-26 01:09:17 -0400;
c53de56f Updates to plot SCE - Fixes palette option - Orders columns by PC1 - Support column summary - New color palettes and scaling options by Ashastry2 <[email protected]> 2024-08-26 00:24:39 -0400;
728406ec Merge pull request <a href="#763">#763</a> from nqgurevich/master by Joshua D. Campbell <[email protected]> 2024-08-24 08:44:45 -0400;
6cd07e1e added .dockerignore to .rbuildignore by Ming Liu <[email protected]> 2024-08-23 13:17:33 -0400;
f2c623f8 removed redundant marker gene tooltip by Ming Liu <[email protected]> 2024-08-20 16:46:41 -0400;
81a5377f fixed Seurat workflow for webapp by Ming Liu <[email protected]> 2024-08-20 16:28:16 -0400;
d6c4f292 Violin plotting for multiple modules by Natasha Gurevich <[email protected]> 2024-08-16 15:17:33 -0400;
b0d3912d seurat bug fix in progress by Ming Liu <[email protected]> 2024-05-28 13:23:50 -0400;
7bdedfb8 Merge pull request <a href="#27">#27</a> from compbiomed/devel by mingl1997 <[email protected]> 2024-05-09 09:11:34 -0400;
17c9f6e6 Merge pull request <a href="#760">#760</a> from joshua-d-campbell/devel by Joshua D. Campbell <[email protected]> 2024-05-03 17:10:11 -0400;
578583f9 Merge pull request <a href="#759">#759</a> from joshua-d-campbell/master by Joshua D. Campbell <[email protected]> 2024-05-03 17:01:28 -0400;
b2d2806a Updated docs to v2.14.0 by Josh Campbell <[email protected]> 2024-05-03 08:54:29 -0400;
e3b4456a Merge pull request <a href="#758">#758</a> from salzcamino/devel by Joshua D. Campbell <[email protected]> 2024-04-30 17:18:55 -0400;
a5e66ac6 Merge branch 'compbiomed:devel' into devel by Salam AlAbdullatif <[email protected]> 2024-04-30 13:33:14 -0400;
744487d2 Merge pull request <a href="#757">#757</a> from joshua-d-campbell/devel by Joshua D. Campbell <[email protected]> 2024-04-30 13:32:42 -0400;
b8d8140e fix seurat report plots with separated samples by salzcamino <[email protected]> 2024-04-30 11:11:18 -0400;
4d7a515a bump x.y.z version to odd y following creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:06:02 -0400;
cd29b840 (origin/RELEASE_3_19, RELEASE_3_19) bump x.y.z version to even y prior to creation of RELEASE_3_19 branch by J Wokaty <[email protected]> 2024-04-30 11:06:02 -0400;
55a065db seurat report fixes by salzcamino <[email protected]> 2024-04-28 16:48:03 -0400;